Issues
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Cover Image
Cover Image
ON THE COVER
Transmission EM tomography reconstruction of the Golgi area from the soma of a motor neuron in the brain of Drosophila larvae lacking the small GTPase Rab2. Th e image shows the drastic ectopic accumulation of immature presynaptic precursor vesicles at the trans-Golgi in the absence of Rab2. Highlighted are the nucleus (blue), ER (yellow), ER–Golgi intermediate compartment (pink), cis-Golgi (magenta), and trans-Golgi (cyan). Image © Götz et al., 2021 https://doi.org/10.1083/jcb.202006040 - PDF Icon PDF LinkTable of Contents
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People & Ideas
Hongyuan Yang: Tracking lipids, one droplet at a time
Hongyuan Yang investigates lipid trafficking and lipid droplet biogenesis.
Spotlights
A TRCky TA protein delivery service snubs the UPS
McQuown et al. highlight work from Culver and Mariappan that reveals that tail-anchored (TA) proteins are correctly targeted and inserted into the ER membrane despite being polyubiquitinated.
Food for thought: How cell adhesion coordinates nutrient sensing
Hamidi and Ivaska preview work from the Korolchuk laboratory describing focal adhesions as hubs mediating growth factor signaling via mTORC1 and amino acid input into the cell.
Viewpoint
GRASPing for consensus about the Golgi apparatus
Christopher G. Burd discusses recent studies that implicate the GRASP65 and GRASP55 proteins in organizing stacks of Golgi cisternae into a ribbon.
Reports
Coupling of Cdc20 inhibition and activation by BubR1
Tight control of Cdc20 activity is required for proper cell division. Here, it is shown that the BubR1 checkpoint protein integrates both Cdc20 inhibition and activation. PP2A-B56 bound to BubR1 removes Cdc20 inhibitory phosphorylation, allowing for efficient mitotic exit.
ZNF416 is a pivotal transcriptional regulator of fibroblast mechanoactivation
Jones et al. determine the role of matrix stiffness in regulating chromatin accessibility in freshly isolated lung fibroblasts. They identify ZNF416 as a key transcriptional regulator controlling fibroblast activation by the mechanical environment with relevance to wound healing and fibrosis.
Endoplasmic reticulum maintains ion homeostasis required for plasma membrane repair
Calcium entry into the injured cell activates their repair, but how cells cope with this excess calcium is not fully understood. Chandra et al. show that cells sequester this calcium in the ER, which is compromised in muscular dystrophy caused by the loss of an ER-resident calcium-activated chloride channel.
Reduced insulin/IGF1 signaling prevents immune aging via ZIP-10/bZIP–mediated feedforward loop
Immunosenescence, or immune aging, is a hallmark of aging. This study shows that inhibition of insulin/IGF-1 receptor reverses immunosenescence in the roundworm Caenorhabditis elegans through a feedback circuit comprising FOXO, HSF-1, and bZIP transcription factors and an insulin-like peptide, INS-7.
Articles
FUS-dependent liquid–liquid phase separation is important for DNA repair initiation
FUS-dependent liquid–liquid phase separation is a critical process in the early activation of the DNA damage response and in the recruitment of key proteins, which facilitates the proper assembly of double-strand break repair complexes.
Plk4 triggers autonomous de novo centriole biogenesis and maturation
Nabais et al. use an egg explant system overexpressing Plk4 to study the spatiotemporal and biochemical regulation of de novo centriole assembly. They show that the onset and kinetics of biogenesis depend on Plk4 concentration, requiring the matrix that surrounds centrioles.
Microtubules form by progressively faster tubulin accretion, not by nucleation–elongation
This study presents a new accretion model for spontaneous microtubule formation. In this model, microtubules form through a multitude of pathways and sheet-like oligomeric intermediates in a process akin to crystal growth.
Deubiquitinases USP20/33 promote the biogenesis of tail-anchored membrane proteins
Culver and Mariappan show newly synthesized tail-anchored (TA) proteins are polyubiquitinated and yet are targeted properly, deubiquitinated, and inserted into the ER. The ER-localized deubiquitinases USP20/33 remove TA ubiquitin modifications. Without USP20/33, ubiquitinated TAs accumulate in the ER membrane.
FIT2 organizes lipid droplet biogenesis with ER tubule-forming proteins and septins
How lipid droplets are formed is largely unclear. Chen et al. show that FIT2 recruits ER tubule-forming proteins and septin cytoskeletons to facilitate nascent LD formation by providing membrane curvature and bulging scaffold.
VPS13D bridges the ER to mitochondria and peroxisomes via Miro
VPS13D mutations result in severe mitochondrial defects. Guillén-Samander et al. show that VPS13D binds VAP in the ER and interacts with Miro on mitochondria and peroxisomes, where it could provide a bridge for lipid transport between these organelles.
VPS13D promotes peroxisome biogenesis
The VPS13 proteins (VPS13A–D) are thought to mediate lipid transport between organelles and are linked to distinct neurological disorders in humans. Baldwin et al. found that, in addition to known involvement in mitochondrial morphology, VPS13D is essential for peroxisome biogenesis.
miR-146 connects stem cell identity with metabolism and pharmacological resistance in breast cancer
Tordonato et al. reveal miRNA-146 as a specific marker for breast stem cells and for cancer stem cells. miR-146 maintains the stem cell identity and coordinates a transcriptional and metabolic program, distinct from bulk cells, connected to the refractoriness to antifolate drugs.
mTORC1 activity is supported by spatial association with focal adhesions
Rabanal-Ruiz and Byron et al. present a novel mechanism of nutrient signaling that identifies FAs as key cellular hubs that coordinate growth factor signaling and amino acid input into the cell and are required for efficient downstream activation of mTORC1.
Type V myosin focuses the polarisome and shapes the tip of yeast cells
Dünkler et al. discover that the subunit Pea2 recruits type V myosin Myo2 to the yeast polarisome. Experimental evidence and biophysical modeling indicate that this interaction generates an actin-dependent force to physically compact and thus spatially focus the polarisome and to mold the bud into its characteristic pointed shape.
RTKN-1/Rhotekin shields endosome-associated F-actin from disassembly to ensure endocytic recycling
Yan et al. identify C. elegans RTKN-1 as a novel endocytic recycling regulator that impedes UNC-60A/cofilin-mediated endosomal actin disassembly. Further evidence indicates that the self-binding capacity of RTKN-1 is indispensable for this functionality and SDPN-1/Syndapin acts to direct the proper residency of RTKN-1 in recycling endosomes.
An asymmetric junctional mechanoresponse coordinates mitotic rounding with epithelial integrity
Monster, Donker, et al. demonstrate how epithelial cells can round up as they enter mitosis while still maintaining the integrity of the epithelial barrier. This requires an asymmetric composition of mitotic cell–cell junctions, which is established through an E-cadherin mechanoresponse in neighbors of mitotic cells.
ALS2 regulates endosomal trafficking, postsynaptic development, and neuronal survival
Postsynaptic development requires the Frizzled nuclear import (FNI) pathway entailing the internalization and subsequent cleavage of Frizzled-2. Kim et al. show that Drosophila ALS2 regulates postsynaptic development by directing Frizzled-2 trafficking to late endosomes, where the Frizzled-2 C terminus is cleaved, and also promotes neuronal survival independently of the FNI pathway.
Rab2 regulates presynaptic precursor vesicle biogenesis at the trans-Golgi
Presynaptic precursors deliver synaptic proteins to nascent and growing synapses. The authors provide evidence that during an early precursor formation step, the small GTPase Rab2 regulates immature precursors formation at the trans-Golgi prior to subsequent Arl8-dependent maturation steps.
Cytonemes with complex geometries and composition extend into invaginations of target cells
Wood et al. use EM to visualize cytonemes, the specialized filopodia that mediate cell–cell signaling. Cytonemes of Drosophila cells have regions defined by oscillating diameters and contents that include ER, mitochondria, and ribosomes. Cytonemes contact target cells by penetrating into invaginations of target cell membranes.
Tools
Time-resolved proteomics profiling of the ciliary Hedgehog response
May et al. combine proximity labeling with quantitative mass spectrometry to profile the proteome of primary cilia in cells responding to Hedgehog. They identify signaling factors that undergo dynamic ciliary enrichment and uncover an unanticipated regulation of ciliary cAMP signaling.
Parameter-free molecular super-structures quantification in single-molecule localization microscopy
Marenda et al. introduce a parameter-free algorithm to quantify super-structures and connected clusters in SMLM datasets. The algorithm is tested on simulated and experimental datasets, demonstrating that it can be used as an unbiased tool to extract information beyond simple clustering.