Issues
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Cover Image
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ON THE COVER
Activation-induced cytidine deaminase (AID) is essential for B cell affinity maturation, while AID deficiency gives rise to giant germinal centers. This image is from a full spleen section of an AID-R112H mouse, which is devoid of AID activity, 7 days after immunization. IgD (a marker for B cells) is shown here in magenta, while green highlights GL-7 (a marker for germinal center B cells), and staining in blue corresponds to CD21/35, which highlights the follicular dendritic cell area that aids in the sustainment of B cell signals in the germinal center reaction. Image © He et al., 2026. https://doi.org/10.1084/jem.20260096 - PDF Icon PDF LinkTable of Contents
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Insights
TACItness MZ B cell maturation
In this issue, Luff et al. show that cell-intrinsic signals from TACI drive marginal zone B cell development from T2 B cells through a mechanism involving activation of the PI3K–AKT pathway and inhibition of the FOXO1-KLF2 axis.
When tumor contact reshapes CAR-T cells
Repeated tumor contact leaves more behind than simple CAR-T exhaustion. This study shows that chronic antigen exposure impairs a Rab5-dependent endocytic program, allowing trogocytosed antigen to accumulate, functional CAR to decline, and fratricide to increase.
Decoding TCR specificity and T cell fate at the immunological synapse
In this issue of JEM, Liu et al. report PRECISE-seq, a proximity labeling platform that integrates T cell receptor specificity, functional potency, and cellular phenotype at a single-cell resolution. Using this approach, they identify an immunosuppressive Ly49+ T cell state within tumors that is alleviated by PD-1 blockade.
Reviews
LCK’ed in: Inborn errors of immunity in LCK reveal how TCR signaling is calibrated
Human LCK deficiency syndromes demonstrate that T cell fate is set by signal amplitude, not molecular identity. This review synthesizes clinical observations with emerging views of thymic microenvironments to illuminate how TCR signal calibration shapes immunity and tolerance.
Brief Definitive Reports
Mesenteric macrophage-monocyte circuit controls systemic inflammation during enteric bacterial infection
Kim et al. demonstrate that during enteric bacterial infection, mesentery-resident macrophages act as a regulatory hub that controls the recruitment of inflammatory monocytes with elevated pro-inflammatory cytokine expression, highlighting a critical role for the gut–mesentery axis in delaying progression to systemic infection.
B7 costimulation antagonizes RORγt+ regulatory T cells and immune tolerance in the intestine
Lyu et al. demonstrate that microbiota-specific RORγt+ regulatory T cells are uniquely restrained by B7 costimulation. Blocking B7, or signal two, promotes RORγt+ regulatory T cells and protects from intestinal inflammation, but only when acting in concert with MHCII-dependent signal one from RORγt+ antigen-presenting cells.
Articles
Epithelial chemokine CCL25 integrates T cell development and intestinal homeostasis
The chemokine CCL25 is expressed in the thymus and the small intestine. Li et al. show that thymic epithelial CCL25 facilitates T cell positive selection in the thymic cortex, whereas intestinal epithelial CCL25 promotes nutrient sensing in the small intestine. Epithelial CCL25 directs thymic T cell development and intestinal homeostasis in a tissue-specific paracrine manner.
PRECISE-seq reveals disease-relevant TCR repertoires with phenotypic plasticity
Liu et al. develop PRECISE-seq, a single-cell platform linking TCR specificity and avidity to T cell phenotypes in vivo. They reveal that high-potency antiviral T cells become exhausted, while tumor-reactive CD8+ T cells acquire a regulatory Ly49+ state that is restrained by PD-1 blockade, resulting in effector revival within tumors.
Rab5 improves CAR T cell efficacy via reducing fratricide and maintaining surface CAR levels
Gu et al. show CAR T cell endocytic activity is lost after continuous tumor engagement. Introduction of Rab5 maintains functional CARs on the cell surface and removes trogocytosed tumor antigen, thereby improving the potency of CAR T cells.
Tet2 deficiency alters CD4+ T cell function and promotes T cell lymphoma with a TFH cell immunophenotype
Heavican et al. show that TET2 is an epigenetic regulator directing transcriptional reprogramming for TFH cell differentiation, and long-term deficiency in CD4+ T cells deregulates self-renewal and skews differentiation, leading to the TFH-derived lymphomagenesis. TET2 loss induces constitutive TCR and ICOS-PI3K activation. Clinical-grade demethylating agents enhance overall survival in Tet2−/− murine models.
LINGO4 coordinates ILC3-intrinsic IL-22 production and microbiota-mediated ILC3 homeostasis
Fachi et al. identify LINGO4 as a key regulator of ILC3s, coordinating mitochondrial fitness and IL-22 production. LINGO4 deficiency disrupts ILC3 function and microbiota composition, altering susceptibility to enteric infections.
BACH2 controls ILC3 function via PPARγ-dependent mitochondrial metabolism
IBD involves the dysfunction of intestinal ILC3s. This study demonstrates that the transcription factor BACH2 maintains ILC3 function via PPARγ-mediated mitochondrial metabolism, thereby protecting against the development of IBD.
TACI regulates marginal zone B cell development
Luff et al. show that TACI, a BAFF and APRIL receptor related to BAFFR, is not a negative regulator of B cell survival as previously reported, but is required for the development of marginal zone B cells.
Antibody-mediated diversification of primary and secondary humoral immune responses
Humoral immune responses diversify over time but whether secreted antibodies influence this process is unknown. Using antibody secretion–deficient mice, this study shows a profound impact of secreted antibodies on the evolution of B cell diversity after vaccination.
AID and TET2 cooperate to demethylate Irf4 for plasma cell fate in germinal center B cells
He et al. identify AID as a key initiator of plasma cell differentiation, beyond its established roles in SHM and CSR. They show that AID cooperates with TET2 to initiate plasma cell commitment by promoting demethylation of the Irf4 locus.
Identification of secondary microglial formation centers in the human fetal brain
This study shows that a secondary microglial expansion center has been identified in fetal brains with oSVZ.
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