Immunotherapies such as immune checkpoint blockade and adoptive cell transfer have revolutionized cancer treatment, but further progress is hindered by our limited understanding of tumor resistance mechanisms. Emerging technologies now enable the study of tumors at the single-cell level, providing unprecedented high-resolution insights into the genetic makeup of the tumor microenvironment and immune system that bulk genomics cannot fully capture. Here, we highlight the recent key findings of the use of single-cell RNA sequencing to deconvolute heterogeneous tumors and immune populations during immunotherapy. Single-cell RNA sequencing has identified new crucial factors and cellular subpopulations that either promote tumor progression or leave tumors vulnerable to immunotherapy. We anticipate that the strategic use of single-cell analytics will promote the development of the next generation of successful, rationally designed immunotherapeutics.
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4 January 2021
Review|
Cancer Focus|
December 18 2020
The current landscape of single-cell transcriptomics for cancer immunotherapy
Puneeth Guruprasad,
Puneeth Guruprasad
Conceptualization, Investigation, Visualization, Writing - original draft, Writing - review & editing
1
Department of Bioengineering, University of Pennsylvania, Philadelphia, PA
2
Center for Cellular Immunotherapies, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
3
Department of Medicine, Division of Hematology and Oncology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
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Yong Gu Lee,
Yong Gu Lee
Writing - review & editing
2
Center for Cellular Immunotherapies, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
3
Department of Medicine, Division of Hematology and Oncology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
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Ki Hyun Kim,
Ki Hyun Kim
Writing - review & editing
2
Center for Cellular Immunotherapies, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
3
Department of Medicine, Division of Hematology and Oncology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
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Marco Ruella
Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing - review & editing
1
Department of Bioengineering, University of Pennsylvania, Philadelphia, PA
2
Center for Cellular Immunotherapies, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
3
Department of Medicine, Division of Hematology and Oncology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
4
Abramson Cancer Center, University of Pennsylvania, Philadelphia, PA
Correspondence to Marco Ruella: mruella@upenn.edu
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Puneeth Guruprasad
Conceptualization, Investigation, Visualization, Writing - original draft, Writing - review & editing
1
Department of Bioengineering, University of Pennsylvania, Philadelphia, PA
2
Center for Cellular Immunotherapies, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
3
Department of Medicine, Division of Hematology and Oncology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
Yong Gu Lee
Writing - review & editing
2
Center for Cellular Immunotherapies, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
3
Department of Medicine, Division of Hematology and Oncology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
Ki Hyun Kim
Writing - review & editing
2
Center for Cellular Immunotherapies, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
3
Department of Medicine, Division of Hematology and Oncology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
Marco Ruella
Conceptualization, Funding acquisition, Methodology, Project administration, Resources, Supervision, Writing - review & editing
1
Department of Bioengineering, University of Pennsylvania, Philadelphia, PA
2
Center for Cellular Immunotherapies, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
3
Department of Medicine, Division of Hematology and Oncology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA
4
Abramson Cancer Center, University of Pennsylvania, Philadelphia, PA
Correspondence to Marco Ruella: mruella@upenn.edu
Received:
October 07 2020
Revision Received:
November 28 2020
Accepted:
December 02 2020
Online Issn: 1540-9538
Print Issn: 0022-1007
Funding:
Gabrielle’s Angel Foundation for Cancer Research
(NO AWARD)
Gilead Sciences
(NO AWARD)
Laffey-McHugh Foundation
(NO AWARD)
Lymphoma Research Foundation
(NO AWARD)
Mark Foundation For Cancer Research
(NO AWARD)
National Cancer Institute
(R00-CA-212302-05)
National Institutes of Health
(NO AWARD)
Parker Institute for Cancer Immunotherapy
(NO AWARD)
© 2020 Guruprasad et al.
2020
This article is distributed under the terms of an Attribution–Noncommercial–Share Alike–No Mirror Sites license for the first six months after the publication date (see http://www.rupress.org/terms/). After six months it is available under a Creative Commons License (Attribution–Noncommercial–Share Alike 4.0 International license, as described at https://creativecommons.org/licenses/by-nc-sa/4.0/).
J Exp Med (2021) 218 (1): e20201574.
Article history
Received:
October 07 2020
Revision Received:
November 28 2020
Accepted:
December 02 2020
Citation
Puneeth Guruprasad, Yong Gu Lee, Ki Hyun Kim, Marco Ruella; The current landscape of single-cell transcriptomics for cancer immunotherapy. J Exp Med 4 January 2021; 218 (1): e20201574. doi: https://doi.org/10.1084/jem.20201574
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