Issues
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Cover Image
Cover Image
ON THE COVER
Th e image shows a CYRI-A and -B double knockout Ewing's sarcoma cell spreading on a fi bronectin matrix. These cells display a characteristic C shape with broad lamellipodia and copious numbers of integrin adhesions. DNA labelled by DAPI is shown in yellow, F-actin labelled by phalloidin in cyan, and integrin α5 in red. Image © Le et al., 2021 https://doi.org/10.1083/jcb.202012114 - PDF Icon PDF LinkTable of Contents
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People & Ideas
Gaia Pigino: Inside the cell
Gaia Pigino studies the molecular mechanisms and principles of self-organization in cilia using 3D cryo-EM.
Spotlights
Hatched and starved: Two chromatin compaction mechanisms join forces to silence germ cell genome
Morao and Ercan highlight work from Belew and colleagues that reveals how germ cells repress transcription during nutrient starvation.
Dynamic Rac1 inhibition by CYRI helps cells drink, but stops them from driving
King discusses work from the Machesky laboratory that identifies CYRI-A as a novel regulator of macropinocytosis that resolves macropinosome formation by locally sequestering active RAC1.
DISCO is key to successful centriole maturation
Gaudin et al. discuss work from the Reiter laboratory demonstrating that the DISCO complex initiates ciliogenesis by restraining centriole length and assembling distal appendages.
Viewpoint
Aurora A kinase activation: Different means to different ends
Tavernier et al. review the different activation mechanisms of the Aurora A kinase during mitotic entry and progression.
Reviews
Who’s in control? Principles of Rab GTPase activation in endolysosomal membrane trafficking and beyond
Borchers et al. review regulatory principles in the activation of endocytic Rab GTPases and how they apply to other Rab and Arf GTPases.
Perspectives
Mitochondrial regulation of ferroptosis
Gan outlines mitochondrial functions in driving ferroptosis and discusses mitochondria-localized defense systems that quench mitochondrial lipid peroxides and suppress ferroptosis.
Reports
Long-lived mitochondrial cristae proteins in mouse heart and brain
Bomba-Warczak et al. use stable isotope labeling of mice and tandem mass spectrometry to discover a pool of mitochondrial proteins persisting for months in tissues containing postmitotic cells. Long-lived proteins are enriched at cristae. Crosslinking analysis revealed limited exchange of subunits throughout their lifetime.
Talin rod domain–containing protein 1 (TLNRD1) is a novel actin-bundling protein which promotes filopodia formation
Cowell et al. show that talin rod domain–containing protein 1 (TLNRD1), a protein with homology to the central region of the integrin regulator, talin, has retained the diverse interactions of talin R7R8 but has developed distinct functionality as an actin-bundling protein that promotes filopodia assembly.
Articles
A global chromatin compaction pathway that represses germline gene expression during starvation
Belew et al. report that C. elegans primordial germ cells become transcriptionally repressed if embryos hatch without nutrients. They also describe a novel pathway whereby condensin II and TOP-2 regulate heterochromatin to compact the germline genome to globally repress transcription.
Extracellular vesicles from neurons promote neural induction of stem cells through cyclin D1
Extracellular vesicles (EVs) may mediate intercellular communication through the transfer of cargo molecules. Song et al. report that cyclin D1 is sorted into EVs during neuronal differentiation and that these EVs help to promote the neural induction of embryonic stem cells.
Assembly of γ-secretase occurs through stable dimers after exit from the endoplasmic reticulum
The assembly of the γ-secretase complex is coordinated by prior formation in the ER of dimeric subcomplexes, which next independently exit the ER. This mechanism could both prevent premature assembly and help the maintenance of stoichiometric levels of γ-secretase subunits during the assembly process.
Ist2 recruits the lipid transporters Osh6/7 to ER–PM contacts to maintain phospholipid metabolism
Tethering proteins at ER–plasma membrane contacts may have specific functions in addition to tethering. This study shows that the yeast TMEM16 tethering protein Ist2 recruits the phosphatidylserine-transporting proteins Osh6 and Osh7 to ER–PM contacts, with this interaction being required for aminophospholipid metabolism in the absence of the phosphatidylserine decarboxylase PSD1.
TDP-43 mediates SREBF2-regulated gene expression required for oligodendrocyte myelination
Ho et al. provide a novel insight on how loss of TDP-43 (a major disease protein) leads to SREBF2 (a key regulator)–dependent disruption of cholesterol metabolism, which in turn affects myelination. Their results further implicate that disturbance of cholesterol metabolism may be involved in ALS, FTD, and TDP-43 proteinopathies–related disease.
CYRI-A limits invasive migration through macropinosome formation and integrin uptake regulation
Le et al. implicate CYRI-A in resolving macropinosome formation by locally sequestering active RAC1. They further show that CYRI-mediated macropinocytosis contributes to integrin internalization, impacting spreading and invasion of cancer cells.
Phagosome resolution regenerates lysosomes and maintains the degradative capacity in phagocytes
Phagocytes engulf particles into phagolysosomes for degradation. However, the ultimate fate of phagolysosomes is undefined. Lancaster, Fountain, et al. show that phagosomes fragment to reform lysosomes in a clathrin-dependent manner. This process helps maintain the degradative capacity of phagocytes for subsequent rounds of phagocytosis.
Small-molecule modulators of INAVA cytosolic condensate and cell–cell junction assemblies
Chang et al. report that the inflammatory bowel disease risk gene INAVA responds to the inflammatory cytokine IL-1β to form cytosolic biomolecular condensates that rapidly assemble and physiologically resolve. The condensates contain ubiquitin and the E3 ligase βTrCP2, implicating function in regulation of cellular proteostasis.
Wnt signaling establishes the microtubule polarity in neurons through regulation of Kinesin-13
Puri et al. demonstrate that the Kinesin-13 family microtubule catastrophe factor is a critical determinant of neuronal microtubule dynamics and polarity. This work provides a mechanistic link between Wnt signaling and Kinesin-13 in establishing microtubule polarity in touch neurons of C. elegans.
Angulin-1 seals tricellular contacts independently of tricellulin and claudins
Obliteration of the paracellular space at tricellular contacts is crucial for the full barrier function of epithelia. This study shows that a tricellular tight junction–associated membrane protein, angulin-1, rather than tricellulin, is essential for the plasma membrane seal at tricellular contacts in vertebrate epithelial cells.
A ciliopathy complex builds distal appendages to initiate ciliogenesis
Kumar et al. identify a multiprotein complex called DISCO (distal centriole complex) required to nucleate distal appendages and restrain centriole elongation, which are essential for the initiation of cilium assembly. Without DISCO, cells fail to ciliate and transduce Hedgehog signals, which are critical for mammalian development.
E3 ubiquitin ligase Wwp1 regulates ciliary dynamics of the Hedgehog receptor Smoothened
At the basal state, the ciliary levels of Smo are kept low through the actions of a ciliary localized E2 ubiquitin–conjugating enzyme, Ube2l3, and an E3 ubiquitin ligase, Wwp1. Pathway activation leads to removal of Wwp1 from cilia, allowing Smo to accumulate in cilia and become activated.
The HSPG syndecan is a core organizer of cholinergic synapses
Zhou, Vachon, et al. identify HSPG Syndecan as a novel core organizer of the cholinergic synapse in C. elegans. Syndecan/SDN-1 acts by bridging extracellular matrix components with intracellular scaffolding proteins to recruit alpha7-like acetylcholine receptors at postsynaptic sites.
The glycoprotein GP130 governs the surface presentation of the G protein–coupled receptor APLNR
Trillet et al. report that the glycoprotein GP130 orchestrates the availability of the G protein–coupled receptor for apelin APLNR at the plasma membrane of glioblastoma stem-like cells, thereby modulating APLN signaling toward self-renewal. By modulating ELMOD1 expression, GP130 ultimately tunes ARF-mediated endovesicular internalization and recycling.
Tools
Catalytically inactive, purified RNase H1: A specific and sensitive probe for RNA–DNA hybrid imaging
Crossley et al. demonstrate that GFP-tagged, catalytically inactive RNase H1 protein is a versatile tool for imaging cellular R-loops. They also show that it is significantly more specific than the commonly used S9.6 antibody, which detects considerable nonspecific signal.
Label-retention expansion microscopy
Shi, Li, et al. report the development of label-retention expansion microscopy (LR-ExM) with a set of trifunctional anchors that not only prevent fluorescent signal loss but also enable high-efficiency labeling using SNAP and CLIP tags.
High-precision targeting workflow for volume electron microscopy
Ronchi et al. present a workflow to facilitate precise targeting for volume EM (vEM) acquisitions. This method allows ultrastructural visualization of single cells within a millimeter-range specimen based on molecular identity characterized by fluorescence.
zapERtrap: A light-regulated ER release system reveals unexpected neuronal trafficking pathways
Bourke et al. present a new method for using light to trigger protein trafficking through the secretory network. They use the method to characterize how synaptic proteins traffic from different subcellular domains in neurons.
Corrections
Correction: ERdj8 governs the size of autophagosomes during the formation process
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