Ca2+ release from the sarcoplasmic reticulum (SR) plays a central role in excitation–contraction coupling (ECC) in skeletal muscles. However, the mechanism by which activation of the voltage-sensors/dihydropyridine receptors (DHPRs) in the membrane of the transverse tubular system leads to activation of the Ca2+-release channels/ryanodine receptors (RyRs) in the SR is not fully understood. Recent observations showing that a very small Ca2+ leak through RyR1s in mammalian skeletal muscle can markedly raise the background [Ca2+] in the junctional space (JS) above the Ca2+ level in the bulk of the cytosol indicate that there is a diffusional barrier between the JS and the cytosol at large. Here, I use a mathematical model to explore the hypothesis that a sudden rise in Ca2+ leak through DHPR-coupled RyR1s, caused by reduced inhibition at the RyR1 Ca2+/Mg2+ inhibitory I1-sites when the associated DHPRs are activated, is sufficient to enable synchronized responses that trigger a regenerative rise of Ca2+ release that remains under voltage control. In this way, the characteristic response to Ca2+ of RyR channels is key not only for the Ca2+ release mechanism in cardiac muscle and other tissues, but also for the DHPR-dependent Ca2+ release in skeletal muscle.

The activity of the skeletal muscle of vertebrates is regulated in the main by voltage sensors/dihydropyridine receptors (DHPRs) in the membrane of the transverse (t-) tubular system (Schneider and Chandler, 1973; Ríos and Brum, 1987; Ríos and Pizarro, 1991; Melzer et al., 1995) and the intracellular [Mg2+], which exerts a powerful inhibitory action on the ryanodine receptors (RyRs)/sarcoplasmic reticulum (SR) Ca2+-release channels in terminal cisternae of the SR (Lamb and Stephenson, 1991, 1994; Lamb, 2002a, 2002b; Dulhunty, 2006; Stephenson, 2006). DHPRs physically interact with RyRs in the narrow junctional space (JS) between t-system and SR membranes at triads, where t-tubules are flanked in close apposition by two terminal cisternae of the SR. The size of the gap at triads between t-tubule and SR membranes is critical for enabling functional crosstalk between DHPRs and RyRs and is primarily determined by junctophilin-1 proteins, JPH-1s, that directly interact at their tubular membrane end (N-terminal region) with DHPRs and at their SR membrane end (C-terminal region) with the respective DHPR-coupled RyR1 (Landstrom et al., 2014; Perni, 2022; Lehnart and Wehrens, 2022). The RyRs in the JS are organized in checkered arrays (Block et al., 1988; Franzini-Armstrong and Nunzi, 1983; Franzini-Armstrong et al., 1998) with every second RyR being physically coupled to a group of four DHPRs forming a tetrad, such that each DHPR in the tetrad is in physical contact with one of the four subunits (protomers) of a RyR. There is broad agreement about a direct line of communication that ensures fast signal transmission from DHPRs activated by t-system membrane depolarization to DHPR-coupled RyRs, but the exact nature of the molecular interactions between skeletal DHPRs and RyRs in the JS remains unclear.

All RyRs immediately adjacent to each other, together with the associated proteins form a couplon (Stern et al., 1997; Franzini-Armstrong et al., 1999), such that triads effectively have two couplons, one on each side of the t-tubule that function independently of each other. In addition to couplons localized in the JS of all vertebrates, non-mammalian skeletal muscles also have variable groups of RyRs on the SR terminal cisternae located outside the JS in parajunctional arrays that do not face t-tubules and do not have contact with DHPRs or RyRs in couplons (Felder and Franzini-Armstrong, 2002).

Skeletal muscles of adult mammals contain almost exclusively the RyR1 isoform, which is one of the three RyR isoforms (RyR1–3) expressed in mammalian tissues. In contrast, skeletal muscles from non-mammalian vertebrates, like frogs—which served for many years as the animal model of choice for investigating the mechanism of excitation–contraction coupling (ECC) in skeletal muscle—express in similar amounts two RyR isoforms: α-RyR and β-RyR, which are homologs of the mammalian isoforms RyR1 and RyR3, respectively (Sutko and Airey, 1996; Murayama et al., 2000; Lanner et al., 2010; Murayama and Kurebayashi, 2011).

There is strong evidence that all couplons in skeletal muscles of mammals and non-mammalian vertebrates consist of RyR1s/α-RyRs and that the parajunctional groups of RyRs found predominantly in non-mammalian muscles consist of RyR3s/β-RyRs (Felder and Franzini-Armstrong, 2002; Perni et al., 2015). The abundant parajunctional arrays of β-RyRs in non-mammalian vertebrate skeletal muscle appear to support and possibly amplify the DHPR-activation-induced Ca2+ release that occurs at the level of couplons, considering, for example, that there are two triads (i.e., four RyR1 couplons) per sarcomere in mammalian skeletal muscle, but only one triad (i.e., two α-RyRs couplons and several β-RyRs parajunctional arrays) per sarcomere of similar length in frog skeletal muscle.

The relative ease of purification of the RyR1 isoform from skeletal muscles of mammals together with its relevance to human conditions contributed to the fact that the RyR1 isoform is the most extensively studied RyR isoform and its ionic control mechanisms are best understood. Manifestly, skeletal muscle fibers of mammals are uniquely suited for investigating how voltage-dependent DHPR activation interacts with ionic control mechanisms of RyR1 activation.

Cully et al. (2018) (see also Barclay and Launikonis, 2022) have shown that the average [Ca2+] in the JS ([Ca2+]js) of human skeletal muscle fibers at rest is considerably greater than that in the bulk of the cytosol ([Ca2+]c) and that [Ca2+]js approaches [Ca2+]c only when the RyR1s are fully blocked. Similarly, Despa et al. (2014) showed a standing diastolic [Ca2+] difference in cardiac myocytes between the cleft (which is equivalent to the JS in skeletal muscle fibers) and the cytosol at large, produced primarily by the diastolic SR Ca2+ leak through the cardiac RyR2s. Furthermore, Sanchez et al. (2021) used a Ca2+-sensitive fluorescent probe targeted to the JS in mouse skeletal muscle fibers and obtained results that are consistent with [Ca2+]js, being several times greater than [Ca2+]c at rest. These observations suggest that a diffusional barrier exists between the JS and most of the cytosol (JS/cytosol barrier), causing JS to function as an intermediate compartment between the SR cisternae and the cytosol at large.

JS, as part of the cytosol, plays a central role in the regulation of SR Ca2+ release because all cytoplasmic regulatory sites on the RyR1s/α-RyRs in a couplon are exposed to the JS rather than to the bulk of the cytosol. For each of the four protomers of one RyR1, there is a Ca2+ activation site (Ca2+ A-site), an ATP-binding site, a caffeine-binding site, and a low-affinity Ca2+/Mg2+ inhibitory I1 site. The location of the Ca2+ A-sites, the ATP sites, and the caffeine-binding sites on the cytoplasmic shell of the RyR1 has been specifically determined in cryo-EM reconstructions by Des Georges et al. (2016). These sites are located close to each other and are part of a “control hub” that regulates the opening of the RyR1 gate (Des Georges et al., 2016). After ATP is bound to its specific sites on the RyR1s in muscle, the control hub is primed to open the RyR1 gate when Ca2+ binds to the A-sites and the inhibitory low-affinity Ca2+/Mg2+ I1-sites are unoccupied (Nayak and Samsó, 2022). The low-affinity Ca2+/Mg2+ I1-sites are situated in the four E-F domains located outside the control hub, at the base of the huge mushroom-like cytosolic shell of the RyR1 (Laver et al., 1997a; Nayak et al., 2024), which rotates outward and downward toward its basis when the control hub is activated to open the RyR1 pore (Des Georges et al., 2016).

Employing a mathematical model based on the role of ionic control mechanisms of RyR1 function developed in the Appendix, I explore here the hypothesis that a sudden rise in Ca2+ leak in the JS through DHPR-coupled RyR1s in couplons, caused by reduction of inhibition at the RyR1 Ca2+/Mg2+ inhibitory I1-sites when the associated DHPRs are activated, is sufficient to enable synchronized responses that trigger a regenerative rise of Ca2+ release that remains under voltage control.

Data S1, S2, S3, S4, S5, and S6 consist of simulations of SR Ca2+ release in skeletal muscle using the mathematical model described in the article under the various conditions mentioned in the text, performed with Wolfram Mathematica online. The program scripts and simulation outputs refer to model predictions for Ca2+ release upon stimulation (1) under physiological conditions when the SR is either normally loaded, or severely depleted of Ca2+, without SR Ca2+ uptake (Data S1), (2) under physiological conditions with strong SR Ca2+ uptake (Data S2), (3) in the presence of 10 mM BAPTA when the SR is either normally loaded, or severely depleted of Ca2+ (Data S3), (4) in the presence of 10 mM EGTA when the SR is either normally loaded or severely depleted of Ca2+ (Data S4), (5) under physiological conditions at submaximal levels of DHPR-activation (Data S5), and (6) in the presence of 20 mM BAPTA at increased ionic strength with SR severely depleted of Ca2+ (Data S6).

Online supplemental material

Data S1, S2, S3, S4, S5, and S6 provide Wolfram Mathematica online program scripts.

JS holds the key to understanding how the mechanism of SR Ca2+ release works

In principle, the time-dependent changes in [Ca2+]js ([Ca2+]js(t)) are determined by differential Eq. 1, where Ca2+− inflow (t) refers to the rate of Ca2+ entry into the JS and Ca2+− outflow (t) refers to the rate of Ca2+ exit from the JS:
(1)
In the presence of a steady Ca2+ inflow into the JS from the SR through the RyR1s/α-RyRs, as would be the case in a muscle fiber at rest, a steady state is reached such that the Ca2+ outflow from the JS into the cytosol at large balances the Ca2+ inflow. Considering that most Ca2+ entry into the JS is through junctional RyR1s/α-RyRs, Ca2+ inflow into the JS can be quantified as the product between a parameter kSRJS that describes SR membrane permeability (measured in ms−1) and the [Ca2+] difference across the SR junctional membrane between [Ca2+] in the SR cisternae, [Ca2+]SR, and [Ca2+]js. Similarly, Ca2+ outflow from the JS is quantified as the product between kdiff that describes the diffusiveness of Ca2+ across JS/cytosol barrier (also measured in ms−1) and the difference between [Ca2+]js and bulk cytosolic [Ca2+], [Ca2+]c. Therefore, at rest,
(2)
and
(3)
Importantly, kSRJS can be determined at a steady state using Eq. 4, when kdiff, [Ca2+]js, [Ca2+]SR, and [Ca2+]c values are known:
(4)
Furthermore, considering that the ratio of DHPR-coupled to DHPR-noncoupled RyR1s/α-RyRs in a couplon is 1:1, it follows that kSRJS changes in proportion to the number n of RyR1s/α-RyRs in a couplon and the mean value between the open probability of one DHPR-coupled (cP0) and one DHPR-noncoupled RyR1/α-RyR (ncP0):
(5)
where γ is a constant with the dimension of ms−1.

Since the cytosolic regulatory sites on RyR1s/α-RyRs in situ are exposed to the JS rather than to the cytosol at large, it follows that the open probability of both DHPR-noncoupled and DHPR-coupled RyRs are sensitive to the ionic concentrations in the JS environment. Eqs. 6 and 7 describe the dependency of the open probability of DHPR-noncoupled RyR1s, ncRyR1s, (ncP0), and DHPR-coupled RyR1s, cRyR1s (cP0), respectively, on [Ca2+]js, [Mg2]js, total [Ca2++ Mg2+]js= [CaMg]js, monovalent metallic cation concentration ([Mm+]js), and SR luminal Ca2+ ([Ca2+]SR). The equations are derived for steady-state conditions in Appendix 1 as Eqs. A14 and A15 within the framework of the dual-inhibition model by Mg2+ of RyR1 activity at the Ca2+ A-sites and low-affinity inhibitory Ca2+/Mg2+ I1 sites in the presence of millimolar ATP, considering structural features of the RyR1 molecules. As described in Appendix 1, Eq. 6/Eq. A14 quantitatively explains the RyR1 open probability measurements made on isolated RyR1s incorporated in lipid bilayers (Laver et al., 1997b; Laver, 2018) and Ca2+ fluxes from Ca2+-loaded heavy SR vesicles (Meissner, 1984, 1986), while Eq. 7/Eq. A15 considers evidence that DHPRs can exert an additional inhibitory action on (DHPR-coupled) RyR1s in skeletal muscle fibers at rest (see Kirsch et al., 2001; Zhou et al., 2006; and references therein).

The first term in Eqs. 6 and 7, PA0, describes the probability of activation at the Ca2+ A-sites of either ncRyR1s or cRyR1s when the four protomeric A-sites of the RyR1s are activated. The values of the protomeric parameters 1pPi, 1pPmax, 1pKMm2, 1pKCaA, 1pKMg, and 1pKL are shown in Table 1 and were derived from experimental observations as described in Appendix 1. 1pPi characterizes the probability of an individual A-site activation in the absence of Ca2+ and Mg2+ in the JS (or cytosol) when the A-site is free or has two Mm+ bound to it, while 1pPmax describes the probability of an individual Ca2+ A-site activation when the A-site is occupied by Ca2+. 1pKMm2 is the dissociation constant of two Mm+ from the Ca2+ A-site, considering that a divalent cationic site is likely to bind two Mm+, 1pKCaA is the Ca2+ dissociation constant from the Ca2+ A-site and 1pKMg is the Mg2+ dissociation constant from the Ca2+ A-site when the SR is depleted of Ca2+ ([Ca2+]SR= 0), and 1pKL is the Ca2+ dissociation constant from the luminal SR Ca2+ site, whose occupancy by Ca2+ alters the Mg2+ dissociation constant of the corresponding A-site as discussed in Appendix 1.

The second terms, ncPI0, in Eq. 6 and cPI0 in Eq. 7, describe the probabilities that the pores of ncRyR1s or cRyR1s channels are not blocked from opening by inhibition at their respective Ca2+/Mg2+ I1-sites. As explained in the Appendix, the Hill Equation with a Hill coefficient of 2 that was used to fit experimental results on Ca2+/Mg2+ inhibition at the I1-sites of isolated RyR1s incorporated in lipid bilayers was deemed to also describe inhibition at the ncRyR1s in muscle. In contrast, the enhanced inhibitory action exerted by DHPRs on cRyR1s was considered to result from an increased level of cooperativity between the four protomers in the cRyR1 that produces quasi-simultaneous binding and dissociation of four Ca2+/Mg2+ ions by a two-state allosteric mechanism (see e.g., Viappiani et al., 2014) at the Ca2+/Mg2+ inhibitory I1-sites, such that cRyR1 channels are blocked from opening at the Ca2+/Mg2+ inhibitory I1-sites when all four I1-inhibitory sites are occupied, and the channels are allowed to open when all four I1-inhibitory sites are free.

The apparent affinity of the I1 sites for Ca2+ and Mg2+ is particularly sensitive to the ionic strength concentration, which is not the case for the Ca2+ A-sites (Shomer et al., 1993; Meissner et al., 1997; Laver et al., 2004). For the ionic conditions prevalent in mammalian skeletal muscle, it is broadly agreed that 50% inhibition at the low-affinity Ca2+/Mg2+ I1-sites of RyR1s occurs at [Ca2+]c+ [Mg2+]c([CaMg]c) in the range of 50 µM (Donoso et al., 2000) to 100 µM (Meissner, 1984, 1986; Laver et al., 1997b; Laver, 2018). In calculations, it was assumed that 50% inhibition at the low-affinity Ca2+/Mg2+ I1-sites of cRyR1s and ncRyR1s at rest occurs at ≈50 μM Mg2+ (and Ca2+) because the results of Donoso et al. (2000) were obtained on native triads of fast-twitch rabbit muscle, where the arrangement of RyR1s and DHPRs in the JS is closest to that in the living muscle at rest. Accordingly, both Kin for ncRyR1s and 4pKin for cRyR1s in Table 1 equal 0.05 mM.
(6)
(7)

Barclay and Launikonis (2022) estimated the Ca2+ inflow into the JS from the SR through the RyR1s (kSRJS([Ca2+]SR[Ca2+]js) at 3.8 µM ms−1 in skeletal human muscle fibers at rest when [Ca2+]SR= 400 µM (Ziman et al., 2010) and [Ca2+]c was buffered at 67 nM with 50 mM EGTA, which has its main molecular forms: H2EGTA2− and Ca-EGTA2− negatively charged. Under these conditions, kdiff, which characterizes the diffusiveness of Ca2+ across the JS/cytosol barrier, was evaluated at 28 ms−1. Using these values in Eq. 2, [Ca2+]js = 203 nM (3.8 µM ms−1/28 ms−1 + 67 nM), and from Eq. 4, kSRJS= 9.525 s−1 (28,000 s−1 × 0.136 µM/399.8 µM) at rest.

Note that the ability of a steady Ca2+ leak Lk = 3.8 µM ms−1 into the JS to generate a difference between [Ca2+]js and [Ca2+]c in the order of 10–130 nM in the presence of 50 mM total EGTA ([EGTA]T) when [Ca2+]c = 67 nM (Cully et al., 2018; Barclay and Launikonis, 2022) is only possible if the diffusiveness of H2EGTA2− and Ca-EGTA2− across the JS/cytosol barrier (kdiffEGTA) is several orders of magnitude lower than that for Ca2+ (kdiff = 28 ms−1). This is because the difference between [Ca2+]js and [Ca2+]c generated by a steady Ca2+ leak into the JS is given by the ratio Lkkdiff+kdiffEGTAKDEGTATKD+Ca2+jsKD+Ca2+c, where KD is the equilibrium dissociation constant of Ca2+ from CaEGTA2− (∼185 nM). Accordingly, a Ca2+ leak of 3.8 µM ms−1 when [Ca2+]c = 67 nM would generate a [Ca2+]js[Ca2+]c difference of 10 or 130 nM when kdiffEGTA= 2.5 s1 (= 8.97 × 10−5kdiff) or 0.0127 s−1 (= 4.56 × 10−7kdiff), respectively. Notice that a diffusiveness of H2EGTA2− and Ca-EGTA2− across the barrier in the order of 0.0127 s−1 necessitates several minutes for [EGTA]T to equilibrate between JS and the rest of the cytosol and indicates that little H2EGTA2− and Ca-EGTA2− is exchanged across the barrier over <100 ms. In principle, a situation where the diffusiveness of H2EGTA2− and Ca-EGTA2− can be orders of magnitude smaller than that for Ca2+ would occur if the JS/cytosol barrier in muscle fibers at rest was negatively charged with relatively small pores.

The estimated values of ncP0 and cP0 for resting conditions ([Ca2+]js = 203 nM, [Ca2+]SR = 400 µM, [Mg2+]js = 1 mM, [Mm+]js= 150 mM, and parameter values in Table 1) are 4.84 × 10−6 and 1.21 × 10−8 using Eqs. 6 and 7, respectively, indicating that ncRyR1s are the main contributors to the RyR1s Ca2+ leak at rest. One can now calculate from Eq. 5 that γ = 3,927.8 n−1 ms−1 [9.525 s−1/(0.5 n × 4.85 × 10−6)] in a couplon containing n RyR1s. (Note that the typical number of RyRs per couplon is about 40 in both mammalian and non-mammalian vertebrate skeletal muscle [Franzini-Armstrong et al., 1999]). The dependence of kSRJS on (cP0 + ncP0) is then obtained by substituting γ back in Eq. 5:
(8)

Regarding the magnitude of kdiff, the value of 28 ms−1 estimated by Barclay and Launikonis (2022) in human skeletal muscle fibers under resting conditions can only support a maximum rate of Ca2+ release from the JS into the cytosol at large of 2.3 µM ms−1 (kdiff×maximum[Ca2+]js×R, where R is the ratio between the JS volume and the volume of cytosolic water) since [Ca2+]js cannot be greater than endogenous [Ca2+]SR ≈ 400 µM and R ≈ 1/4,930 according to Table 3 in Barclay and Launikonis (2022). In comparison, the maximal SR Ca2+ release rate into the cytosol of mouse muscle fibers ranges between 55 and 200 µM ms−1 (see e.g., Sztretye et al., 2011; Baylor and Hollingworth, 2012), indicating that kdiff needs to rise strongly above its resting level during stimulation to support much higher SR Ca2+ release rates.

Simple mechanisms for raising the value of kdiff following excitation can be envisaged like those used to open floodgates in a reservoir when the level of water in the reservoir exceeds a certain level. For example, a mechanism for raising the value of kdiff following excitation could involve the significant movement of the RyR1 cytosolic shells in the JS when the central control hubs are activated to open the RyR1 pores (Des Georges et al., 2016). Such movement can putatively alter the microarchitecture in the junctional gap between the SR and tubular membranes by altering interactions between JPHs, activated DHPRs, and RyRs with activated control hubs to increase the size of the junctional gap so as to allow Ca2+ to diffuse more freely from the JS into the rest of the cytosol. In the following calculations, it is assumed that kdiff rises linearly with the level of RyR1 activation at the Ca2+ A-sites, PA0, from a base value of 14 ms−1 that is 50 % of the value (28 ms−1) estimated by Barclay and Launikonis (2022) for resting conditions, i.e., kdiff = 14 ms−1 + b PA0. In the presence of mM ATP, the value of PA0 also describes the activation level of RyR1 control hubs in a couplon that, in turn, determines the amount of movement in the RyR1 cytosolic shells that is associated with the magnitude of Ca2+ diffusiveness across the JS/cytosol barrier. Considering that kdiff = 28 ms−1 and PA0 = 0.00194 for resting conditions, it follows that b ≈ 7,216 ms−1, and therefore,
(9)
Note that calsequestrin, which acts as a buffer for luminal Ca2+ in the SR cannot maintain [Ca2+]SR close to its endogenous level of ∼400 µM, when many RyR1s open simultaneously as shown by Sztretye et al. (2011). Considering a total endogenous SR Ca per SR volume of ∼11 mM in fast-twitch mammalian muscle fibers (Fryer and Stephenson, 1996), it follows that about 10.6 mM Ca2+ is bound to calsequestrin at endogenous [Ca2+]SR = 400 µM. Further, considering that calsequestrin has an apparent equilibrium Ca2+ dissociation constant of ∼1 mM for [Ca2+] < 400 µM (Park et al., 2004), it implies that calsequestrin in the SR has a Ca2+ binding capacity, CSQcap, of ∼37.1 mM per SR volume [= 10.6 mM (1 mM + 0.4 mM)/0.4 mM]. Since Ca2+ dissociates very fast from calsequestrin associated with junctional SR membranes (Beltrán et al., 2006) one can assume that Ca2+ bound to calsequestrin ([CaCSQ(t)]) in the SR is effectively in equilibrium with [Ca2+(t)]SR, such that at any time t, [CaCSQ(t)] = 37.1 mM ([Ca2+(t)]SR/1 mM)/(1 + [Ca2+(t)]SR/1 mM). The time course of [Ca2+(t)]SR in the presence of a rapid Ca2+ efflux from the SR is essentially given by the differential Eq. 10, where the SR–Ca2+-release flux(t) expressed per SR volume is equivalent to the SR–Ca2+-entry flux(t) into the JS volume reduced by the ratio between SR volume to JS volume (= 271 according to Table 3 in Barclay and Launikonis, 2022) and with changed sign:
or
(10)

Proposed model for mechanism of DHPR-dependent activation of Ca2+ release in skeletal muscle

Experiments with mechanically skinned muscle fibers showed that the ability of DHPRs, when activated, to open RyR1s/α-RyRs in the presence of millimolar ATP, is facilitated when [Mg2+]c is decreased below 1 mM, is curtailed when [Mg2+]c is raised above 1 mM, and is effectively blocked at 10 mM [Mg2+]c (Lamb and Stephenson, 1991, 1992, 1994). The fact that maximal activation of the DHPRs cannot open the RyR1s/α-RyRs pores in the presence of 10 mM [Mg2+]c strongly suggests that the inhibition exerted by Mg2+ on the RyR1s/α-RyRs must be removed (Lamb and Stephenson, 1991, 1994) before pores can open. Based on these experiments Lamb and Stephenson proposed that activation of DHPRs by depolarization of the t-system membrane induces a 10–20-fold decrease in the affinity of Mg2+ binding to sites on RyR1s/α-RyRs that inhibit the opening of the RyR1s/α-RyRs (Lamb and Stephenson, 1991, 1994, Stephenson 1996, 2006; Stephenson et al., 1998; Lamb, 2000, 2002a, 2002b; Laver 2018; and references therein).

Support for voltage- and implicitly DHPR-activation-dependent change in [Mg2+]-induced inhibition of SR–Ca2+ release observed in mechanically skinned muscle fibers has been further obtained from experiments on isolated triads (Ritucci and Corbett, 1995) and voltage-clamped cut fibers of frog (Jacquemond and Schneider, 1992) and rat (Jóna et al., 2001). For example, Jóna et al. (2001) reported a 10-fold decrease in the apparent affinity of Mg2+ binding to sites on rat RyR1s when the membrane potential of the muscle fiber changed from normal polarization to full depolarization.

Thus, one can envisage that a sudden reduction of inhibition at the low-affinity Ca2+/Mg2+ I1 sites of cRyR1s in a couplon caused by activation of the DHPRs, could initiate a positive feedback loop that increases Ca2+ leak into the JS, raising [Ca2+]js in the micromolar range that subsequently activates more cRyR1s at their A-sites to open their pores, which in turn, further increases the Ca2+ leak/flux into the JS.

For proof of principle, it is assumed, in the first instance that (1) couplons are initially equilibrated under resting conditions [[Ca2+]js = 203 nM, [Ca2+]c= 67 nM, [Ca2+]SR = 400 µM, [Mg2+]js = 1 mM, [Mm+]js= 150 mM], (2) [Ca2+]c, [Mg2+]js, and [Mm+]js do not change following maximal activation of the DHPRs, (3) Ca2+ binding to calsequestrin is in rapid equilibrium with [Ca2+]SR and does not affect RyR1 function, (4) there is no putative activation of the ncRyR1s by their neighboring cRyR1s when the latter become activated by DHPR activation, and (5) the SR–Ca2+ pump is blocked. For modeling, the kinetics of activation of the cRyR1s it was considered that the functional state of the RyR1s is determined by the level of ion occupancy at the Ca2+ activation A-sites and the low-affinity Ca2+/Mg2+ inhibition I1 sites on the four protomers of a RyR1 at time t, and that the binding rate constants of Ca2+, Mg2+, and Mm+ to RyR1 sites (kon) are diffusion-limited, with kon = 4 × 108 M−1 s−1, like those for BAPTA (4.5 × 108 M−1 s−1 for Ca2+; Naraghi, 1997) and ATP (4 × 108 M−1s−1 for Mg2+; Pecoraro et al., 1984). The dissociation rate constants (koff) of Ca2+, Mg2+, and Mm+ from specific RyR1 sites were then obtained from the equilibrium dissociation constants (KD) listed in Table 1 (koff = konKD), which were derived from experimental results as described in Appendix 1.

Eq. 11, where Ca1pAt/1pATotalandMg1pAt/1pATotal represent normalized levels of Ca2+- and Mg2+- occupancy on the protomeric A-sites in the couplon at time t and 4pKin is the Ca2+/Mg2+ equilibrium dissociation constant from I1 sites on protomers of cRyR1s, describes the time dependence of the open probability of one ncRyR1 and one cRyR1 [ncP0(t) + cP0(t)] when the system is not at steady-state and is derived from Eq. A27 in Appendix 1 with parameter values in Table 1:
(11)

Note that as indicated in Table 1, 4pKin = 0.05 mM when DHPRs are not activated and 1.5 mM when DHPRs are maximally activated.

Time-dependent changes of specific properties associated with the functional state of cRyR1s and ncRyR1s in a couplon following perturbations induced by sudden 30-fold rise in apparent dissociation constant at the inhibitory Ca2+/Mg2+ I1 sites of cRyR1s were obtained by numerically solving the set of four differential Eqs. 12, 13, 14, and 15 in [Ca2+(t)]js, [Ca1pA(t)]/[1pATotal], [Mg1pA(t)]/[1pATotal], and [Ca2+(t)]SR with Wolfram Mathematica online (program scripts provided in Data S1, S2, S3, S4, S5, and S6).

Eq. 12 is derived from Eqs. 1, 8, 9, and 11 where Ca2+inflowt=kSRJSCa2+tSRCa2+tjs, Ca2+outflowt=kdiffCa2+tjs0.067μM, and PA0t=(0.56+0.351+250μM/Ca2+tSR(1Ca1PAt1PATotal-Mg1PAt1PATotal)+0.963Ca1PAt1PATotal)4 and describes the time dependence of [Ca2+(t)]js immediately after the sudden 30-fold rise in 4pKin from 0.05 to 1.5 mM:
(12)
Eqs. 13 and 14 are derived from Eqs. A23 and A24 in Appendix 1, respectively, considering that [Mm+]js = 150 mM and KMm= 172.1 mM (Table 1) and describe the time-dependent changes of the normalized levels of Ca2+- and Mg2+- occupancy at the protomeric A-sites in the couplon:
(13)
(14)
Finally, Eq. 15 describes the time course of [Ca2+]SR and was derived from Eq. 10 after ncP0(t) + cP0(t) was substituted with the expression given in Eq. 11:
(15)

Fig. 1 A shows the predicted timecourse of [Ca2+(t)]js after the sudden reduction of inhibition at the low-affinity Ca2+/Mg2+ I1 sites of cRyR1s in a couplon caused by maximal activation of the DHPRs in a mammalian muscle fiber. At time zero, 4pKin suddenly rises from 0.05 to 1.5 mM in the cRyR1s of a couplon induced by the simultaneous maximal activation of the associated DHPRs (as considered in Eq. 12). Mg2+ dissociates very quickly from the Ca2+/Mg2+ I1 sites of cRyR1s with a rate constant koff in the order of 6 × 105 s−1 (4 × 108 M−1 s−1 × 1.5 mM), ensuring the swift reduction of inhibition at the I1 sites of cRyR1s within few µs that, in turn, induces a 581-fold rise of [Ca2+]js from 0.203 nM to 70 µM within 0.5 ms (see inset in Fig. 1 A). The very large rise in [Ca2+]js facilitates the rapid displacement of Mg2+ from the A-sites on all RyR1 protomers in the couplon so as to increase the Ca2+ occupancy at the A-sites from 14.6% at rest to 97% within 2 ms following the DHPR-induced rise in 4pKin (Fig. 1 B). With the SR Ca2+ pump blocked, there is a rapid SR Ca2+ depletion such that [Ca2+]SR decreases 89% of the initial value after 20 ms and 99.2% after 500 ms of maximal DHPR activation (Fig. 1 C). Meanwhile, the open probability of the DHPR-coupled RyR1s (cPo(t)) shoots up from 1.2 × 10−8 to 0.62 within 4 ms (while ncPo(t) only rises from 4.8 × 10−6 to 1.7 × 10−3) causing the SR Ca2+ permeability to increase from 0.0095 to 1,200 ms−1 in 3.5 ms (inset in Fig. 1 C). The large increase in cPo(t) supports an SR Ca2+ flux into the cytosol at large with a peak of 61.0 µM ms−1 (expressed as Ca2+ released per volume of cytoplasmic water) after 1.8 ms following excitation (Fig. 1 D). Note that the maximal rate of SR Ca2+ release into the cytosol can exceed 100 µM ms−1 if all cRyR1s in the couplon become activated and induce the simultaneous activation of all adjacent ncRyR1s as suggested by experiments where two or more RyR1s that are physically connected when incorporated in lipid bilayers can open and close simultaneously (Marx et al., 1998; Laver et al., 2004; Porta et al., 2012).

The inset in Fig. 1 D shows the time course of the SR Ca2+ flux into the cytosol when the SR Ca2+ pump is very active, returning 200 μM Ca2+ (relative to SR volume) ms−1 (1 − [Ca2+t)]SR/400 µM) that would fill the empty SR in a resting fiber in a matter of 200 ms. [Ca2+]SR decreases by 82.5% of its initial value after 20 ms of maximal stimulation and then equilibrates at 59.5 µM. The reduced Ca2+ gradient across the SR membrane causes the SR Ca2+ release flux to drop to a lower level without the pump having any significant effect on the peak of the SR Ca2+ release flux into the cytosol (inset Fig. 1 D). Thus, as the simulation shows, the SR Ca2+ flux will decrease from an early peak to a lower level at constant stimulation when the SR-Ca2+ release flux exceeds the Ca2+ return flux by the SR-Ca2+ pump. The reduction in the Ca2+ flux entering the JS further reduces [Ca2+]js(t), causing cP0 and SR membrane permeability to decrease, the outcome resembling a Ca2+ inactivation process of RyR1s.

According to simulations shown in Fig. 2, [Ca2+]js(t) and SR Ca2+ release flux are determined by the fraction of DHPR-activated cRyR1s. Consequently, the charge movement associated with DHPR activation of cRyR1s is a measure of DHPR-activated cRyR1s. The close association between SR Ca2+ release and fraction of DHPR-activated cRyR1s shown in Fig. 2 will therefore result in voltage control of Ca2+-release through voltage-dependent DHPR-activation.

The proposed mechanism of DHPR-dependent activation of Ca2+ release is robust in the presence of Ca2+ buffers and when the SR Ca2+ content is reduced

Let us assume that 10 mM of a fast Ca2+ buffer such as BAPTA is present in the cytosol at large in a resting mammalian muscle fiber at the time of stimulation. The Ca2+-bound form of BAPTA (CaBAPTA2−) carries two negative charges suggesting that the diffusiveness of CaBAPTA2− across a negatively charged JS/cytosol barrier is orders-of-magnitude smaller compared with that of Ca2+ as it is the case for CaEGTA2−, discussed above. The very large difference between the diffusiveness of Ca2+ and CaEGTA2− or CaBAPTA2− ensures that a steady Ca2+ leak into the JS generates a [Ca2+]js–[Ca2+]c difference that is about the same at steady-state in the absence as in the presence of mM BAPTA or EGTA.

The association rate constant of Ca2+ to BAPTA4− (BAPTAkon) and the dissociation rate constant of Ca2+ from CaBAPTA2− (BAPTAkoff) were taken as 4.5 × 108 M−1 s−1 (= 0.45 µM−1 ms−1) and 79 s−1 (= 0.079 ms−1), respectively, based on the study of Naraghi (1997) conducted at pH 7.2 and 22°C. Consequently, the dissociation equilibrium constant for BAPTA, BAPTAKD = BAPTAkoff/BAPTAkon is 0.1756 µM and the concomitant changes in [Ca2+(t)]js, [CaBAPTA]js ([CaBAPTA (t)]js) and [BAPTAfree]js(10,000 µM–[CaBAPTA(t)]js) are governed by Eqs. 16 and 17:
(16)
(17)
where (ncP0(t) + cP0(t)) is given by Eq. 11 and PA0t=(0.56+(0.35/1+250μM/Ca2+tSR)×(1Ca1pAt1pATotal-Mg1pAt1pATotal)+0.963[Ca1pAt]1pATotal)4.

The time course of [Ca2+(t)]js and that of the other parameters associated with the functional state of cRyR1s and ncRyR1s in couplons following the sudden DHPR-activation–dependent decreased inhibition at the I1 sites of cRyR1s in the presence of 10 mM BAPTA was predicted by numerically solving the system of Eqs. 13, 14, 15, 16, and 17 with Wolfram Mathematica online for two sets of conditions when the “fiber” was at rest, before being stimulated. In one case, the values of the parameters in the fiber at rest were same as those in the absence of 10 mM BAPTA ([Ca2+]SR = 400 µM, [Ca2+]js = 203 nM, [Ca2+]c= 67 nM, [Mg2+]js = 1 mM and [Mm+]js= 150 mM). In the other case, the SR was severely depleted of Ca2+ with [Ca2+]SR = 100 µM, but [Ca2+]js, [Mg2+]js and [Mm+]js were kept the same as in the first case to permit more direct examination of the effect of SR Ca2+ depletion on the activation of SR Ca2+ release. The marked reduction in the Ca2+ leak into the JS at rest caused by the lower luminal SR Ca2+ can only sustain a difference of ∼5 nM between [Ca2+]js and [Ca2+]c. Therefore, [Ca2+]c at rest was deemed to be 198 nM (= 203–5 nM) in this case. All other assumptions detailed in the paragraph prior to the description of Eq. 11 were also adopted for computing the time course of Ca2+ release in the presence of 10 mM BAPTA.

When the SR is endogenously loaded with Ca2+ at the time of DHPR activation, the [Ca2+(t)]js response is slightly delayed in 10 mM BAPTA (Fig. 3 A and inset) than in the absence of BAPTA (Fig. 1 A and inset), but it reaches the same peak (70 µM) after 3 ms with BAPTA and after 0.6 ms without BAPTA. The SR Ca2+-release flux into the cytosol (inset in Fig. 3 B) reaches a peak that is just a fraction higher in the presence than in the absence of BAPTA (61.5 versus 61.0 µM per volume of cytosol ms−1, respectively) due in part to the slightly delayed decrease in [Ca2+(t)]SR (Fig. 3 B).

In contrast, when the SR is severely depleted of Ca2+ at time of maximum DHPR activation ([Ca2+(0)]SR = 100 µM) in 10 mM BAPTA, there is a relatively long delay after stimulation (∼35 ms) for [Ca2+(t)]js to reach the threshold for producing a spike (Fig. 3 C trace a). The inset in Fig. 3 C (trace b) displays the time course of [Ca2+(t)]js when [Ca2+]SR(0) = 100 µM in the absence of BAPTA, showing that the presence of BAPTA is responsible for the delay, but does not affect [Ca2+(t)]js peak height. Similarly, in the presence of 10 mM BAPTA, there is a delay before [Ca2+]SR starts to decrease more rapidly (Fig. 3 D) and before SR Ca2+-release flux into the cytosol reaches its peak (inset in Fig. 3 D). When [Ca2+]SR(0) = 100 µM in the absence of BAPTA, [Ca2+]SR decreases rapidly without delay after stimulation, while the SR Ca2+-release flux reaches the same peak height as in the presence of BAPTA 9.1 ms after stimulation (Fig. 3 E). Significantly, if 10 mM BAPTA is replaced with 10 mM EGTA, which binds and releases Ca2+ slower than BAPTA (EGTAkon = 0.00167 µM−1 ms−1, EGTAkoff= 0.00031 ms−1) and the SR is severely depleted of Ca2+ at time of DHPR activation, the spike in [Ca2+(t)]js occurs without delay and the SR Ca2+-release flux starts rising within 2 ms (Data S4).

There is an apparent discrepancy between the ∼35-ms delay predicted by the model for the onset of [Ca2+]SR decrease after stimulation in the presence of 10 mM BAPTA when [Ca2+]SR(0) = 100 µM (Fig. 3 D) and the absence of such delay in experiments of Olivera and Pizarro (2018), who measured the time course of [Ca2+]SR in frog muscle fibers after stimulation following SR Ca2+ depletion to [Ca2+]SR = 100 µM in the presence of 20 mM BAPTA (see Fig. 3 B in their paper). The depletion of [Ca2+]SR in these experiments occurred after the addition of 20 mM BAPTA (2.04 mM CaBAPTA2− and 17.96 mM BAPTA4− at 20 nM [Ca2+] with Cs+ as counterion) to an internal Cs-based solution of ∼150 mM ionic strength. The addition of 20 mM BAPTA would have increased the overall ionic strength of the internal solution by about 186–336 mM, which, in turn, would have raised Kin to ≥2.5 mM according to measurements of Laver et al. (2004) using Cs-based solutions of similar ionic strength (see their Fig. 1 and Table 1). A greater Kin would reduce inhibition at the Ca2+/Mg2+ I1 sites of non-DHPR-coupled RyRs at constant cytosolic [Mg2+] (∼1 mM). Consequently, PI0 in the muscle fibers at rest would have risen considerably in the experiments of Olivera and Pizarro (2018) after the addition of 20 mM BAPTA and would have caused the SR Ca2+ leak into the JS and the rest of the cytosol to rise in spite of a gradual decrease of [Ca2+]SR from 400 to 100 µM, as was indeed reported by Olivera and Pizarro (2018). As a result, [Ca2+]js at time of stimulation would have been sizably greater in the experiments of Olivera and Pizarro (2018) than 203 nM considered in the model simulation shown in Fig. 3 D. In the model simulation shown in Fig. 3 E, a rise in Kin (and 4pKin) from 0.05 to 0.25 mM (rather than to 2.5 mM) caused [Ca2+]js to rise to 1.6 µM when [Ca2+]SR= 100 μM at the time of stimulation and produce a prompt decline of [Ca2+]SR upon stimulation, as reported by Olivera and Pizarro (2018) in their experiments (Data S6). Thus, apparent controversies between experimental observations and model-based predictions could be simply due to differences between perceived values of parameters at the time of stimulation in experimental settings and actual values used in model-based simulations.

It is also important to mention that the proposed mechanism of Ca2+ release predicts that maximal DHPR activation induces a regenerative Ca2+ release spike even when [Ca2+]SR is reduced to 10 µM in the presence of 10 mM BAPTA in the JS, and [Ca2+]js ≈ [Ca2+]c = 0.10 µM. In this case, according to simulation, [Ca2+(t)]js reaches 1.3 µM after 12.9 s of continuous stimulation if the DHPRs do not become inactivated and the diffusiveness of BAPTA across the JS/cytosol barrier under resting conditions is negligible over this period of 12.9 s (Data S3).

Taken together, these results highlight the robustness of the proposed hypothesis.

Overview of the putative mechanism of Ca2+ release in skeletal muscle

Central to the proposed hypothesis is the presence of a diffusional JS/cytosol barrier that supports an elevated [Ca2+]js relative to [Ca2+]c in the presence of a small Ca2+ leak into the JS. Sudden activation of DHPRs on DHPR-coupled RyR1s/α-RyRs induces a sudden, localized disturbance at the low-affinity Ca2+/Mg2+ I1-inhibitory sites of the coupled RyR1s/α-RyRs by allosteric regulation. The signal between the sites of physical interaction of the four DHPRs with the four protomers of the cRyR1 and the base of the RyR1, where the I1-sites are located is possibly transmitted via long levers that provide long-range allosteric pathway within the cytosolic shell of the RyR1s as recently proposed by Nayak et al. (2024). The disturbance at the I1 sites raises the Ca2+/Mg2+ equilibrium dissociation constant causing a small fraction of DHPR-activated cRyR1s to open their pores at the prevalent [Ca2+]js when inhibition at their I1 sites is eased. Consequently, the Ca2+ flux/leak into the JS rapidly rises and the presence of the JS/cytosol diffusional barrier facilitates the rise of [Ca2+]js that starts a regenerative Ca2+ activation process confined to the fraction of voltage-activated coupled RyR1s/α-RyRs. The rising [Ca2+]js causes Ca2+ to displace Mg2+ at the A-sites of RyR1s/α-RyRs leading to full activation of the DHPR-activated fraction of RyR1s/α-RyRs. As shown in Fig. 2, [Ca2+]js(t) and SR Ca2+ release flux are governed by the fraction of DHPR-activated cRyR1s, which ensures voltage control of Ca2+-release through voltage-dependent DHPR-activation. Increased Ca2+ diffusiveness across the JS/cytosol barrier by a mechanism analogous to that that opens floodgates in a reservoir when the level of water in the reservoir exceeds a certain level greatly enhances the Ca2+ flux from the JS into the bulk cytosol. Deactivation or inactivation of DHPRs rapidly reinstates inhibition at the Ca2+/Mg2+ I1 sites of the DHPR-coupled RyR1s/α-RyRs in the presence of 1 mM [Mg2+]js. Consequently, the vast majority of DHPR-coupled RyR1s/α-RyRs close, Ca2+ leak into the JS and [Ca2+]js declines, and Mg2+ binds to the A-sites of all RyRs in the couplons, further reducing the size of the Ca2+ leak into the JS and [Ca2+]js.

Points of caution

Essential to the proposed model for the mechanism of Ca2+ release in skeletal muscle by DHPRs is the existence of a diffusional barrier between the narrow space, where cytosolic Ca2+ and Mg2+ regulatory sites are located on RyRs, and the rest of the cytosol. There is evidence that this barrier displays low diffusiveness for Ca2+ at low [Ca2+]js (Barclay and Launikonis, 2022) and even a much lower diffusiveness (by orders of magnitude) for divalent anions such as CaEGTA2− and EGTA2− (as detailed in this paper), features that are typical of cation exchange membranes (Tekinalp et al., 2023). Such membranes carry fixed negative charges that severely reduce the diffusiveness of divalent anions relative to cations (Tekinalp et al., 2023). The extremely low diffusiveness of anions ensures that little exchange takes place between anions in the JS and those in the rest of the cytosol for relatively short periods of time after stimulation. As shown by simulations of the proposed model, the orders-of-magnitude lower diffusiveness of the barrier for divalent anions than for Ca2+ allows Ca2+ induced Ca2+-release to produce a spike following stimulation even in the presence of large concentrations of negatively charged Ca2+ buffers like CaEGTA2−/EGTA2− or CaBAPTA2−/BAPTA4−. The precise nature of the barrier is not known, although it is likely to incorporate proteins present in the JS including DHPRs, RyRs, JPHs, and possibly metabolic enzymes that are densely packed around myofibrils at triads. For the model to produce Ca2+ fluxes with peak values reported in the literature, the diffusiveness of Ca2+ across the barrier needs to increase by orders-of-magnitude as [Ca2+]js rises. Movement in the cytosolic shells of RyRs when control hubs associated with A-sites become activated may alter interactions between RyRs with activated control hubs, activated DHPRs, and JPHs to increase the junctional gap between the SR and tubular membranes and change the properties of the barrier such as to allow Ca2+ to diffuse more freely from the JS into the rest of the cytosol. As suggested below, new experiments are needed to determine the nature of the barrier and characterize more fully its properties.

Suggested experiments to test the proposed hypothesis

Two types of experiments are suggested to test the foundations on which this hypothesis is based.

The diffusional JS/cytosol barrier in mammalian skeletal muscle should be further characterized preferably using Ca2+ probes targeted to the JS (Despa et al, 2014; Luo and Hill, 2014; Sanchez et al, 2021) under conditions where the magnitude of the steady RyR1 Ca2+ leak is altered by changing the SR Ca2+-loading, altering [Mg2+]c, [Ca2+]c, or introducing modulators of RyR1 activity such as caffeine and low-level voltage-dependent activation of DHPRs. Alternatively, impermeant, low-affinity, negatively charged Ca2+-dyes that diffuse very slowly across JS/cytosol barrier could be used with immobilized, freshly mechanically skinned muscle fibers with intact ECC (Lamb and Stephenson, 2018). The dye is first loaded for ∼30–60 min into the JS from a cytosolic solution containing the dye. The dye is then thoroughly washed out from the cytosol at large with several rinses. Changes in the dye signal predominantly from the JS upon rapid alteration of the Ca2+ leak could provide new information in support or against the presence of a selective diffusional barrier between the JS and the cytosol at large on which the hypothesis is based.

According to predictions based on the proposed hypothesis, there is a delay before a regenerative Ca2+ release spike occurs in the presence of 10 mM BAPTA (but not in the presence of 10 mM EGTA) after stimulation that causes DHPR activation when [Ca2+]SR 0.1 mM. Measurements of SR Ca2+ release in mammalian muscle fibers, similar to those performed by Olivera and Pizarro (2018), under conditions that [Ca2+]SR 0.1 mM at the time of stimulation in the presence of [Ca2+]c < 10 nM and critically that the ionic strength in the presence of 10 mM BAPTA is kept within the physiological range with K+ as the main cation in solution can provide evidence in support or against the proposed hypothesis.

Ion competition model for Mg2+ inhibition of RyR1s

The dual-inhibition model of RyR1 activity by Mg2+ in the presence of millimolar ATP specifies that RyR1s are inhibited when either Mg2+ is bound to cytosolic Ca2+ A-sites of the RyR1s or when cytosolic Ca2+/Mg2+ I1-sites on the RyR1s are occupied by Ca2+ or Mg2+ (see reviews by Laver 2018; Meissner 2017; and references therein). Conversely, the RyR1s become maximally activated when the overall probability is highest for cytosolic Ca2+ A-sites to be occupied by Ca2+ and the cytosolic Ca2+/Mg2+ I1 sites are free of Ca2+ or Mg2+.

The overall open probability (P0) of a RyR1 channel is described as the product between an activation term PA0 and an inhibition term PI0:
(A1)

The activation term PA0 expresses the probability that the control hub of the RyR1 molecule containing the Ca2+ A-sites causes the RyR1 pore to open when Ca2+/Mg2+ I1 sites on the RyR1 are not occupied by either Ca2+ or Mg2+. On the other hand, the inhibition term PI0 expresses the probability that the pore of the RyR1 channel is not inhibited at the low-affinity Ca2+/Mg2+ I1 sites.

Importantly, millimolar ATP activates RyR1s in the absence of Ca2+ ([Ca2+] = 1 nM) and Mg2+ (Smith et al., 1986; Meissner et al., 1986; Laver et al., 2004), and Mg2+ also potently inhibits RyR1 activation induced by ATP. These observations were quantitatively explained by reasoning that the pore of the RyR1 channel can open in the presence of millimolar ATP not only when Ca2+ is bound to the A-sites (as is the case in the absence of ATP) but also when the A-sites are free, or when two Mm+ are bound to them (and inhibition at the Ca2+/Mg2+ I1 sites is not complete) (Laver et al., 2004; see caption to Table II in Laver et al., 2004). Pi and Pmax express the level of RyR1 activation (0 to 1) at the A-sites when the A-sites are free or have two Mm+ bound to them, and when the A-sites are saturated with Ca2+, respectively.

Ion competition at individual Ca2+ A-sites in the presence of ATP

All parameters associated with individual/protomeric ion binding sites on the RyR1 molecule are preceded by the “1p” superscript to distinguish them from corresponding parameters associated with activation of isolated RyR1 molecules that have four integrated protomers. The latter parameters are not preceded by a superscript.

Eq. A2 expresses the probability 1pPA0 that an individual/protomeric A-site is activated in the presence of ATP by either Ca2+ being bound to it, by two Mm+ such as K+ (or Cs+) being bound to it, or by being free at various cytosolic concentrations of Ca2+ ([Ca2+]c), Mg2+ ([Mg2+]c), and Mm+ ([Mm+]c), when Ca2+, Mg2+, and Mm+ compete for binding to the respective A-site. In contrast, the individual A-site is inhibited when Mg2+ is bound to it. The equilibrium dissociation constant of cytosolic Mg2+ from an individual A-site has the lowest value in the absence of luminal Ca2+ and increases when luminal [Ca2+] ([Ca2+]L) rises due to a non-competitive allosteric process (Laver et al., 2004) according to the following relation: 1pKMg(1 + [Ca2+]L/1pKL), where 1pKMg is the equilibrium dissociation constant of Mg2+ from the individual A-site in the absence of [Ca2+]L, and 1pKL is the Ca2+ dissociation constant from the luminal L-site of the respective protomer.1pPi in Eq. A2 expresses the level of an individual A-site activation (0 to 1) in the absence of cytosolic Ca2+ and Mg2+, when the A-site is free, or has two Mm+ bound to it, while 1pPmax expresses the level of activation at the A-site in the presence of millimolar ATP at saturating [Ca2+]c. [1pKMm]2 is the dissociation constant of two Mm+ from the A-site considering that a divalent cationic site is likely to bind two Mm+ and 1pKCaA is the Ca2+ dissociation constant from the A-site. At steady state,
(A2)

Activation of isolated RyR1 molecules at Ca2+ A-sites in the presence of millimolar ATP

Since the control hub of one RyR1 molecule includes the A- and L-sites of all four protomers, activation of the RyR1 hub would require that all four protomers have their A-site activated. In this scenario, the activation term PA0 in Eq. A1 expresses the probability that all four protomers on a RyR1 molecule have their A-site activated. Then, if each protomer is independently activated at its A-site with probability 1pPA0, the probability that all four protomers are activated is given by (1pPA0)4, and PA0 is given by Eq. A3:
(A3)
Conversely, if the value of the activation term PA0 is known at the level of one RyR1 molecule, then the probability 1pPA0 of an individual RyR1 protomer to have its A-site activated in the presence of millimolar ATP, is given by Eq. A4
(A4)

Based on the experimental results of Laver et al. (2004) on the open probability of isolated RyR1s incorporated in lipid bilayers in the presence of 2 mM ATP and Eqs. A2, A3, and A4, one can derive all parameter values necessary to quantitatively describe activation at individual A-sites under different ionic conditions with respect to luminal Ca2+ and cytosolic Ca2+, Mg2+, and Mm+ concentrations, and quantitatively verify how well predictions based on Eqs. A2 and A3 can explain experimental observations made on isolated RyR1s.

Derivation of parameter values for activation at individual Ca2+ A-sites of RyR1 in the presence of millimolar ATP

Derivation of 1pPmax and 1pPi parameter values

The value of 1pPmax can be derived from the maximum RyR1 open probability, PMax, when [Ca2+]c is raised in the absence of Mg2+ using Eq. A2. According to Table I of Laver et al. (2004), PMax = 0.86 at both 0.01 and 1 mM [Ca2+]L. Substituting PA0 with PMax and 1pPP0 with 1pPmax in Eq. A4, it follows that 1pPmax = 0.963 and is independent of [Ca2+]L in the range 0.01–1 mM.

1pPi refers to the level of individual A-site activation in the absence of cytosolic Ca2+ and Mg2+. According to Eq. A21pPA0=1pPi in the absence of cytosolic Ca2+([Ca2+]c 1 nM) and Mg2+. Similarly, Pi refers to the level of individual A-site activation in the absence of cytosolic Ca2+ and Mg2+, hence PA0= Pi. Moreover, since all Ca2+/Mg2+ I1 sites on the RyR1 molecule are free in the absence of cytosolic Ca2+ and Mg2+, and therefore, PI0= 1, it follows from Eq. A1 that P0= PA0(= Pi). Furthermore, since 1pPA0= (PA0)0.25 in Eq. A4, it means that 1pPi=1pPA0= (PA0)0.25 = (P0)0.25 in the absence of cytosolic Ca2+ and Mg2+. Laver et al. (2004) reported P0 values of 0.21 ± 0.16 and 0.25 ± 0.07 for RyR1s in the presence of 50 and 250 mM cytosolic [Cs+], respectively, when [Ca2+]L = 0.1 mM, [Ca2+]c= 1 nM, and [Mg2+]c= 0 (Table III in Laver et al. (2004), Control column). Since the mean P0 values are close to each other and not statistically significantly different from each other, it indicates that P0 is not sensitive to [Mm+]c in the range 50–250 mM in the absence of cytosolic Ca2+ and Mg2+. Using the mean average value for P0= 0.23 in the absence of cytosolic Ca2+ and Mg2+ when [Ca2+]L = 0.1 mM, it follows that 1pPi ≈ (0.23)0.25 = 0.6925. Similarly, the values reported by Laver et al. (2004) in Table III for P0 at [Ca2+]L = 1 mM in 50 mM (0.45 ± 0.20) and 250 mM (0.58 ± 0.06) cytosolic [Cs+] in the absence of cytosolic Ca2+ and Mg2+ are relatively close and not statistically significantly different from each other, supporting the view that Pi is not sensitive to [Mm+]c in the range 50–250 mM in the absence of cytosolic Ca2+ and Mg2+. Taking the mean average value of 0.515 for P0 in the absence of cytosolic Ca2+ and Mg2+ when [Ca2+]L = 1 mM, it follows that 1pPi ≈ (0.515)0.25 = 0.8471.

When [Ca2+]L was raised to 3 mM in the absence of cytosolic Ca2+ ([Ca2+]c= 1 nM) and Mg2+ in 250 mM cytosolic [Cs+], Laver et al. (2004) reported in Table III a P0 value of 0.63 ± 0.07. Using the same approach, the derived value for 1pPi (= (P0)0.25) is 0.891 when [Ca2+]L= 3 mM. Laver et al. (2004) also reported in Table I that Pi = 0.1 ± 0.07 in 250 mM [Cs+] when [Ca2+]L was 0.01 mM. The derived value for 1pPi (= (Pi)0.25) based on Eq. A4 is 0.562. Thus, Pi is sensitive to [Ca2+]L but not to the cytosolic [Mm+] in the range 50–250 mM.

The dependence of 1pPi on [Ca2+]L over the [Ca2+]L range 0.01–3 mM is well predicted by Eq. A5 (0.573 versus 0.562 at 0.01 mM [Ca2+]L; 0.66 versus 0.692 at 0.1 mM [Ca2+]L; 0.84 at 1 mM [Ca2+]L and 0.883 at 3 mM [Ca2+]L):
(A5)

Derivation of 1pKMm2, 1pKL, and 1pKMg parameter values

In the absence of [Ca2+]c,Eq. A2 reduces to Eq. A6:
or
(A6)

According to Table III in Laver et al. (2004), the P0 values measured at [Ca2+]L = 0.1 mM in the absence of Ca2+ ([Ca2+]c = 1 nM) and Mg2+ were reduced 50% by 8 µM cytosolic [Mg2+]c in the presence of [Cs+]c = 50 mM and by 20 µM [Mg2+]c in the presence of [Cs+]c = 250 mM. Since inhibition at the Ca2+/Mg2+-I1 sites is negligible (<0.7%) at these low [Mg2+]c in the absence of cytosolic Ca2+, it follows that P0 = PA0 in the absence of [Ca2+]c and [Mg2+]c and P0≈ PA0 when [Mg2+]c ≤ 8 μM at 50 mM and ≤20 μM at 250 mM [Mm+]c. Consequently, 1pPA0= 0.6925 when P0 = PA0= 0.23 and is not sensitive to [Mm+]c in the range 50–250 mM in the absence of [Ca2+]c and [Mg2+]c. The 50% reduction of P0 from 0.23 to 0.115 corresponds to the reduction of 1pPA0 from 0.695 to 0.582 (= (0.115)0.25) based on Eq. A4. 1pPi is also insensitive to the [Mm+]c in the range 50–250 mM at constant [Ca2+]L since by definition 1pPi = 1pPA0 in the absence of Ca2+ and Mg2+. The value of the left term in Eq. A6(1pPi/1pPA01) (1pKMg(1 + [Ca2+]L/1pKL)) is therefore the same at 50 and 250 mM [Mm+]c for conditions where 1pPA0 is reduced to 0.582 at 0.1 mM [Ca2+]L. The rightside term in Eq. A6 ([Mg2+]c/(1 + [Mm+]c2/1pKMm2) must have the same value when PA0 (0.23) decreases by the same fraction (50%) in 50 and 250 mM [Cs+]c, i.e., 8 µM/(1 + 2,500 mM2/1pKMm2) = 20 µM/(1 + 62,500 mM2/1pKMm2). Consequently, 1pKMm2= 37,500 mM2, 1pKMm= 193.6 mM, and the value of the right side term of Eq. A6 is 7.5 µM (8 µM/1.06(6) = 20 µM/(2.6(6)), meaning that (1pPi/1pPA01) (1pKMg(1 + [Ca2+]L/1pKL)) = 7.5 µM. Since (1pPi/1pPA01) = (0.6925/0.582 − 1) = 0.18986 and [Ca2+]L = 0.1 mM, it follows that 1pKMg(1 + 0.1 mM/1pKL) = 39.5 µM.

1pKMm2 can also be evaluated from the P0 measurements of Laver et al. (2004) in Table III for 1 mM [Ca2+]L at 50 and 250 mM [Cs+]c. The values of P0 measurements made at 1 mM [Ca2+]L for 50 and 250 mM [Cs+]c in the absence of Ca2+ and Mg2+ were similar and not statistically significantly different from each other, indicating that P0 is not sensitive to [Mm+]c in the range 50–250 mM. Consequently, the mean value of the two sets of measurements (P0 = 0.515) was taken to describe the open RyR1 probability in the absence of Ca2+ and Mg2+ at 1 mM [Ca2+]L. Since in this case there is no inhibition at the I1 sites, PA0 = P0= 0.515 and 1pPi = 1pPA0= (0.515)0.25 = 0.8471. The value of P0 was reduced by 50% in the presence of 20 µM [Mg2+]c in the 50 mM [Cs+]c solution and 72 µM [Mg2+]c in the 250 mM [Cs+]c solution in the absence of cytosolic Ca2+ ([Ca2+]c1 nM) when [Ca2+]L was kept at 1 mM. Note that inhibition at the I1 sites was estimated to be ∼4% in the presence of 20 µM [Mg2+]c at 50 mM [Cs+]c and negligible (<0.1%) in the presence of 72 µM [Mg2+]c at 250 mM [Cs+]c. In view of this, P0 = PA0 = (0.515/2) and 1pPA0 = (0.515/2)0.25 = 0.712 for 250 mM [Cs+]c, and PA0 = 0.2678 (= 1.04 × 0.515/2) and 1pPA0 = (0.2678)0.25 = 0.719. Dividing the left side term of Eq. A6 for 50 mM [Cs+]c by the left side term of Eq. A6 for 250 mM [Cs+]c and the right side term of Eq. A6 for 50 mM [Cs+]c by the right side term of Eq. A6 for 250 mM [Cs+]c, one obtains the following expression: (0.8471/0.719 − 1)/(0.8471/0.712 − 1) = (20 µM/72 µM)(1 + 62,500/1pKMm2)/(1 + 2,500 mM2/1pKMm2) or 3.384 (1 + 2,500 mM2/1pKMm2) = (1 + 62,500 mM2/1pKMm2) and 1pKMm2= 22,668 mM2 with 1pKMm = 150.6 mM. Furthermore, from Eq. A6, it follows that 1pKMg(1 + 1 mM/1pKL) = ([Mg2+]c/(1 + [Mm+]c2/1pKMm2)) (1pPA0/(1pPi1pPA0)) = 119.1 µM.

The 1pKL and [Mg2+]c values were obtained by solving the system of equations: 1pKMg(1 + 0.1 mM/1pKL) = 39.5 µM and 1pKMg(1 + 1 mM/1pKL) = 119.1 µM, which yielded 1pKL= 346.6 µM and 1pKMg= 30.65 µM.

The values for 1pKMm obtained from the two sets of independent measurements were 193.6 and 150.6 mM. The mean value for 1pKMm obtained from the two sets of measurements (172.1 mM) was used for quantitative predictions of RyR1 activation.

Derivation of 1pKCaA parameter value

Laver et al. (2004) used Eq. A7 to describe the relation between PA0 and [Ca2+]c in the absence of [Mg2+]c, where Ka is the [Ca2+]c value at half-activation ([Ca2+]c50):
(A7)
In the absence of [Mg2+]c, the relation between PA0 and [Ca2+]c is described by Eq. A8, which is derived from Eqs. A2 and A3:
(A8)

Since Pi = (1pPi)4 and PMax = (1pPmax)4, it follows that the minimum (Pi) and the maximum (PMax) values of the PA0 curves generated by Eq. A7 are the same as the minimum (1pPi)4 and the maximum (1pPmax)4 values of the PA0 curves generated by Eq. A8.

According to Eq. A7, half-activation P50 = (Pi+ PMax)/2 happens when [Ca2+]c = Ka. The value of 1pKCaA can then be calculated from Eq. A8 after substitution of PA0 with (Pi+ PMax)/2 and [Ca2+]c with Ka. The value of Ka at 0.01 mM [Ca2+]L (0.4 ± 0.1 µM) is not significantly different from that at 1 mM [Ca2+]L (0.3 ± 0.1 µM) according to Table I and Fig. 1 of Laver et al. (2004). Therefore, Ka is considered to have the intermediary value of 0.35 µM and be independent of [Ca2+]L in the range 0.01–1 mM.

From Table I of Laver et al. (2004), Pi = 0.4 and PMax = 0.86 at [Ca2+]L = 1 mM, [Cs+]c = 250 and 2 mM ATP such that PA0 at half-activation point, P50 = (Pi+ PMax)/2 = 0.63. Based on this information, the relevant parameters in Eq. A8 have the following values: PA0 = 0.63, 1pPi = (0.4)0.25 = 0.795, 1pPmax = (0.86)0.25 = 0.963, [Ca2+]c= 0.35 µM, 1 + [Mm+]c2/1pKMm2 = 1 + (250/172.1)2 = 3.1 (using estimated 1pKMm value of 172.1 mM as described above). Substituting the values of these parameters in Eq. A8, it follows that 0.63 = {[(0.795 × 3.1 + 0.963 × 0.35 µM/1pKCaA)/(3.1 + 0.35 µM/1pKCaA)]}4 and 1pKCaA= 0.085 µM = 85 nM.

Another estimate for 1pKCaA is obtained from measurements reported by Laver et al. (2004) in Table I at [Ca2+]L = 0.01 mM, [Cs+]c = 250 mM, 2 mM ATP, Pi = 0.1, PMax = 0.86. The values of the relevant parameters in Eq. A8 are: PA0 = (Pi+ PMax)/2 = 0.48, 1pPi = (0.1)0.25 = 0.5623, 1pPmax = (0.86)0.25 = 0.963, [Ca2+]c= 0.35 µM, 1 + [Mm+]c2/1pKMm2 = 1 + (250/172.1)2 = 3.1. Substitution of parameters in Eq. A8 with their values leads to the following expression: 0.48 = [(0.5623 × 3.1 + 0.963 × 0.35 µM/1pKCaA)/(3.1 + 0.35 µM/1pKCaA)]4 and 1pKCaA= 0.0546 µM = 54.6 nM.

Based on these two estimates (85 and 54.6 nM), the dissociation constant of Ca2+ from the Ca2+ A-site of a RyR1 protomer, 1pKCaA, is approximated to 70 nM.

The values of parameters 1pPi, 1pKMm2, 1pPmax, 1pKCaA, 1pKMg, and 1pKL derived in the Appendix needed to quantitatively describe PA0 under different ionic conditions are shown in Table 1.

How predictions based on Eqs. A3 and A4 compare with predictions derived from generic Hill equations

Laver et al. (2004) used to fit the data points for the activation section of the open probability of isolated RyR1s incorporated in lipid bilayers (PA0) in the presence of 2 mM ATP using curves generated by generic Hill Equations such as Eq. A7.

Fig. A1 displays pairs of curves generated by Eqs. A7 and A8 that have the same minima and maxima and have the mid P050 [= (Pi+ PMax)/2] occurring at the same [Ca2+]c. For this to happen, 1pPi= (Pi)0.25, 1pPmax= (PMax)0.25, and
(A9)

As shown in Fig. A1, the two curves generated by Eqs. A7 and A8 when [Ca2+]L = 1 mM effectively overlap over the entire [Ca2+]c range while the two curves when [Ca2+]L = 0.01 mM are equally suitable for fitting experimental data. Importantly, the qualitative distinguishing feature between the two curves in a pair is that the curves generated by Eq. A8 are based on the knowledge that there is one Ca2+ A-site for each of the four protomers that constitute the RyR1 molecule, while the curves generated by Eq. A7 are based on the presumption that there is only one Ca2+ A-site per RyR1 molecule.

Eq. A10, derived from Eqs. A2 and A3, in conjunction with parameter values in Table 1 describe activation at the Ca2+ A-sites of isolated RyR1s in the presence of mM ATP and different ionic conditions with respect to [Ca2+]c, [Mg2+]c, [Mm+]c, and [Ca2+]L
(A10)

Ion inhibition at the RyR1 Ca2+/Mg2+-I1 sites

The inhibition term PI0 expresses the probability that the pore of the RyR1 channel is not inhibited at the low-affinity Ca2+/Mg2+-I1 sites in the presence of Mg2+ and Ca2+ ions that can bind to the Ca2+/Mg2+-I1 sites on the RyR1 molecule.

Since Ca2+/Mg2+-I1 sites on individual RyR1s appear to have the same affinity for Ca2+ and Mg2+ (Laver et al., 2004), PI0 depends on the sum of [Ca2+]c+ [Mg2+]c= [CaMg]c, rather than on specific [Ca2+]c and [Mg2+]c. Kin in Eq. A11 corresponds to the [CaMg]c at which RyR1s display 50% inhibition at the Ca2+/Mg2+-I1 sites. The second power of the term [CaMg]c2/Kin2 in the Hill Eq. A11 was experimentally determined when the Mg2+ inhibition at the Ca2+/Mg2+-I1 sites was measured in single RyR1 channels (Laver et al., 1997a, 1997b, 2004):
(A11)

As mentioned elsewhere, the Ca2+/Mg2+-I1 sites on RyR1s are particularly sensitive to ionic strength and other factors that do not affect the Ca2+ A-sites (Shomer et al., 1993; Meissner et al., 1997; Laver et al., 1997a, 1997b, 2004), suggesting that the strength of Mg2+ (and Ca2+) binding to these low-affinity sites can be readily altered by subtle changes in the arrangement of negative charges that demarcate these sites. For example, the decrease in ionic strength by 150 mM associated with the reduction of [Cs+]c from 250 to 100 mM caused a 10-fold reduction in [Ca2+]c for 50% inhibition at the low-affinity Ca2+/Mg2+-I1 sites on RyR1s (Laver et al., 2004; Table I). As justified in the text, 50% inhibition at the Ca2+/Mg2+-I1 sites of RyR1s is likely to occur at ≈50 μM Mg2+ based on measurements of Ca2+ release from native triads made by Donoso et al. (2000).

For skeletal muscle fibers at rest, Eq. A12, where Kin = 0.05 mM, is taken to describe the probability ncPI0 that the gates of ncRyR1s are not blocked from opening by Ca2+/Mg2+ occupation at the I1-sites:
(A12)
Evidence that DHPRs can exert an additional inhibitory action on cRyR1s in mammalian skeletal muscle fibers (see Kirsch et al., 2001; Zhou et al., 2006; and references therein) can be accommodated by assuming that DHPRs increase the level of cooperativity for Ca2+/Mg2+ binding to the I1 sites of cRyR1s Ca2+/Mg2+ while displaying 50% inhibition at same [CaMg]js (0.05 mM) as ncRyR1s. For example, if the four Ca2+/Mg2+ inhibitory I1 sites on a cRyR1 molecule act cooperatively to cause quasi-simultaneous binding and dissociation of four Ca2+/Mg2+ ions by a two-state allosteric mechanism that is akin to the binding of four O2 to one hemoglobin molecule consisting of four subunits (Viappiani et al., 2014), then the cRyR1 channel is blocked from opening at the Ca2+/Mg2+ inhibitory I1 sites when all four I1-inhibitory sites are occupied, and the channel is allowed to open when all four I1-inhibitory sites are free. The probability cPI0 that cRyR1 channels are not blocked from opening at their inhibitory I1 sites at given [CaMg]js is then described by Eq. A13 with 4pKin = 0.05 mM:
(A13)

Fig. A2 shows the cPI0 dependence on [CaMg]js based on Eq. A13 in comparison with the dependence of ncPI0 on [CaMg]js using Eq. A12. The two curves intersect at their mid-point where [CaMg]js = 0.05 mM. The steeper decline of cPI0 compared with ncPI0 indicates that inhibition at the Ca2+/Mg2+-I1 sites is more complete for cRyR1s than for ncRyR1s at [CaMg]js >0.05 mM. For example, under physiological conditions, when [Mg2+]c ≈ [Mg2+]js= 1 mM, cRyR1s would be inhibited 99.99 % at the Ca2+/Mg2+-I1 sites (cPI0 = 0.01%) in the presence of 0.1 µM [Ca2+]js compared with the ncRyR1s that would be only 99% inhibited (ncPI0 = 1%). This means that the number of ncRyR1s that can become activated at 1 mM [Mg2+]js and 0.1 µM [Ca2+]js is 100-fold greater than the number of cRyR1s. Thus, stronger cooperativity for Ca2+/Mg2+ binding at the Ca2+/Mg2+ inhibitory sites on cRyR1s would considerably increase the level of RyR1 inhibition in a muscle fiber at rest. The increased inhibitory effect exerted by DHPRs on RyR1s in mammalian skeletal muscle can largely explain why interventions that prevent or disrupt interactions between DHPRs and the RyR1s reduce the stability of junctional RyR1 arrays and increase the occurrence of spontaneous spark-like events (Shirokova et al., 1999; Kirsch et al., 2001; Zhou et al., 2006).

Quantification of the open probability of RyR1s in skeletal muscle

Based on Eqs. A10, A12, and A13, and parameter values in Table 1, one can now evaluate the dependence of the open probability of ncRyR1s (ncP0) and cRyR1s (cP0) at steady state, on [Ca2+]SR and ionic composition of the JS to which the cytosolic regulatory A- and I1 sites of RyR1s are exposed:
(A14)
(A15)

However, during rapid changes in [Ca2+]js when the regulatory sites on the RyR1s are not at steady state with the ions in their environment, ncP0 and cP0 are time-sensitive (ncP0(t) and cP0(t)) and depend on the specific level of ion occupancy at the A-sites and I1-sites at time t, which determine the functional state of the RyR1s.

As already mentioned in the text, the assumption was made that Ca2+, Mg2+, and Mm+ bind with a diffusion-limited binding rate constant of kon = 4 × 108 M−1 s−1 to RyR1 regulatory sites and dissociate from regulatory sites with a rate constant (koff) estimated from the corresponding dissociation constants KD listed in Table 1 (koff = konKD= 4 × 108 M−1 s−1KD).

Consequently, the probability that ncRyR1s and cRyR1s are activated at their A-sites, where ncPA0(t) =cPA0(t) = PA0(t) is given by Eq. A16, where [1pATotal] is the total concentration of individual/protomeric A-sites in a couplon; [1pA(t)free]/[1pATotal], [Mm21pA(t)]/[1pATotal], and [Ca1pA(t)]/[1pATotal] are the normalized concentrations of individual A-sites on the ncRyR1s and cRyR1s that are not complexed with cations (i.e., are free), A-sites that are complexed with two Mm+ and A-sites that are complexed with Ca2+, respectively; 1pPi expresses the level of individual Ca2+ A-site activation when the Ca2+ A-site is free or has two Mm+ ions bound to it, while 1pPmax refers to the level of Ca2+ A-site activation when complexed with Ca2+:
(A16)
Since the total concentration of A-sites on ncRyR1s and cRyR1s, [1pATotal], is constant, it follows that at any time t:
or
(A17)
Substitution of [1pAfree(t)] from Eq. A17 into Eq. A16 leads to Eq. A18, which shows that the probability that ncRyR1s or cRyR1s are activated at their A-sites (or at their control hubs when mM ATP is present) only depends on the normalized concentrations of A-sites complexed with Ca2+ ([Ca1pA(t)]/[1pATotal]) and Mg2+ ([Mg1pA(t)]/[1pATotal]):
(A18)
The rate constant for binding Mm+ to unoccupied protomeric A-sites in the presence of 150 mM [Mm+] is in the order of 6 × 107 s−1 (4 × 108 M−1 s−1 × 0.15 M). This ensures rapid equilibration (on a 1 µs timescale) of Mm+, Mm+ bound to A-sites on RyR1 protomers, Mm21pA(t), and unoccupied A-sites, 1pAfree(t), such that for all practical purposes:
(A19)
When the expression of [Mm21pA(t)] from Eq. A19 is substituted in Eq. A17, it follows that:
(A20)
Ca2+ binding to unoccupied 1pAfree(t) sites in the JS is described by differential Eq. A21, where 4 × 108 M−1 s−1 is the Ca2+ binding rate constant and 28 s−1 is the dissociation rate constant of Ca2+ from Ca1pA (4 × 108 M−1 s−1 × 1pKCa, where 1pKCa = 70 nM in Table 1):
(A21)

Ca2+ dissociates very fast from luminal Ca2+ sites, with a rate constant kLoff = 1.386 × 105 s−1, considering that the Ca2+ dissociation rate constant kLoff= 4 × 108 M−1 s−1KL, where KL, = 346.6 µM (Table 1). This ensures rapid alteration in the Mg2+ dissociation constant at A-sites within 0.03 ms when [Ca2+]SR changes.

Mg2+ binding to unoccupied A-sites (1pAfree(t)) in the JS is described by Eq. A22, where 4 × 105 s−1 represents Mg2+ binding rate at 1 mM [Mg2+]js (4 × 108 M−1 s−1 × 10−3 M), and the Mg2+ dissociation rate constant from the A-sites complexed with Mg2+, Mg1pA(t), is 1.226 × 104 (1 + [Ca2+]SR/346.6 µM) s−1 (4 × 108 M−1 s−1 x 1pKMg (1 + [Ca2+]SR/KL)), where 1pKMg = 30.65 µM and KL = 346.6 µM in Table 1):
(A22)
Substitution of [1pAfree(t)] from Eq. A20 into Eqs. A21 and A22 followed by division by [1pATotal] of both Eqs. A21 and A22 leads to Eqs. A23 and A24:
(A23)
(A24)
Eqs. A23 and A24 are essential to define the time course of [Ca1pA(t)]/[1pATotal] and [Mg1pA(t)]/[1pATotal], which in turn define the time course of PA0(t) in Eq. A18. The overall time course of the open probability of cRyR1s (ncP0) and ncRyR1s (ncP0) would then be determined by Eqs. A25 and A26, where cPI0 (t) and ncPI0(t) are the time-dependent normalized concentrations of ncRyR1s (Eq. A12) and cRyR1sEq. A13 that are not inhibited at their low Ca2+/Mg2+ affinity inhibitory I1-sites:
(A25)
(A26)

Since the rates for Ca2+ and Mg2+ binding to the I1 sites depend on the sum of [Ca2+]js(t) + [Mg2+]js(t), [CaMg(t)]js, the binding rate of divalent cations to these sites in the presence of 1 mM [Mg2+]js is in the order of 4 × 105 s−1 (4 × 108 M−1 s −1 × 10−3 M), ensuring that the level of occupation by Ca2+/Mg2+ at the I1 sites of both DHPR-noncoupled and DHPR-coupled RyR1s equilibrates within 10 µs at prevalent [Ca2+]js(t) such that inhibition at the I1 sites of DHPR-noncoupled and DHPR-coupled RyR1s can be described as ncPI0(t) = 1/(1 + ([CaMg(t)]js)2/Kin2) and cPI0(t) = 1/(1 +([CaMg(t)]js)4/4pKin4), respectively, on a time scale >0.01 ms.

Thus, the time dependence of the open probability of one DHPR-noncoupled RyR1 (ncP0(t)) and one DHPR-coupled RyR1 (cP0(t)), when the system is not at steady state, is described by Eq. A27 on a time scale >0.02 ms:
(A27)

All data are available in the article itself, and in Datasets 1–6 in the online supplemental material.

Eduardo Ríos served as editor.

I thank retired Professor of Biochemistry Gabriela M. Stephenson for insightful comments regarding this work, the editors and reviewers for their constructive criticisms and suggestions that lead to several versions of this paper, and La Trobe University for having a site license with Wolfram Mathematica.

Author contributions: D.G. Stephenson: Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Visualization, Writing—original draft, Writing—review & editing.

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Author notes

This work is part of a special issue on excitation−contraction coupling.

Disclosures: The author declares no competing interests exist.

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