Mitophagy transports mitochondria to lysosomes for degradation to maintain energy homeostasis, inflammation, and immunity. Here, we identify CipB, a type III secretion system (T3SS) effector from Chromobacterium violaceum, as a novel exogenous mitophagy receptor. CipB targets mitochondria by the mitochondrial protein TUFM and recruits autophagosomes via its LC3-interacting region (LIR) motifs. This process initiates the mitophagy-TFEB axis, triggering TFEB nuclear translocation and suppression of proinflammatory cytokines, thereby promoting bacterial survival and pathogenesis. CipB represents a conserved family of T3SS effectors employed by diverse pathogens to manipulate host mitophagy. Using a mouse model, CipB’s mitophagy receptor function is critical for C. violaceum colonization in the liver and spleen, underscoring its role in bacterial virulence. This study reveals a novel mechanism by which bacterial pathogens exploit host mitophagy to suppress immune responses, defining CipB as a paradigm for exogenous mitophagy receptors. These findings advance our understanding of pathogen–host interactions and highlight the mitophagy-TFEB axis as a potential signaling pathway against bacterial infection.
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November 21 2025
Bacterial CipB is an exogenous receptor to drive the mitophagy-TFEB axis and promote pathogenesis
Shuai Liu
,
Shuai Liu
(Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing)
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
3Department of Biochemistry,
SUSTech Homeostatic Medicine Institute, School of Medicine, Southern University of Science and Technology
, Shenzhen, China
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Lina Ma
,
Lina Ma
(Data curation, Investigation, Validation)
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
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Ruiqi Lv
,
Ruiqi Lv
(Investigation, Validation)
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
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Liangting Guo
,
Liangting Guo
(Investigation, Visualization)
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
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Xing Pan
,
Xing Pan
(Investigation)
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
2
Institute of Infection and Immunity, Taihe Hospital, Hubei University of Medicine
, Shiyan, China
3Department of Biochemistry,
SUSTech Homeostatic Medicine Institute, School of Medicine, Southern University of Science and Technology
, Shenzhen, China
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Shufan Hu,
Shufan Hu
(Resources)
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
2
Institute of Infection and Immunity, Taihe Hospital, Hubei University of Medicine
, Shiyan, China
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Shan Li
(Conceptualization, Data curation, Funding acquisition, Project administration, Resources, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing)
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
2
Institute of Infection and Immunity, Taihe Hospital, Hubei University of Medicine
, Shiyan, China
3Department of Biochemistry,
SUSTech Homeostatic Medicine Institute, School of Medicine, Southern University of Science and Technology
, Shenzhen, China
Correspondence to Shan Li: [email protected], [email protected]
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Shuai Liu
https://orcid.org/0009-0000-5052-9509
Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
3Department of Biochemistry,
SUSTech Homeostatic Medicine Institute, School of Medicine, Southern University of Science and Technology
, Shenzhen, China
Lina Ma
https://orcid.org/0009-0004-8168-0075
Data curation, Investigation, Validation
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
Ruiqi Lv
https://orcid.org/0000-0002-4826-6348
Investigation, Validation
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
Liangting Guo
https://orcid.org/0009-0002-5014-0629
Investigation, Visualization
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
Xing Pan
https://orcid.org/0000-0002-7774-4214
Investigation
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
2
Institute of Infection and Immunity, Taihe Hospital, Hubei University of Medicine
, Shiyan, China
3Department of Biochemistry,
SUSTech Homeostatic Medicine Institute, School of Medicine, Southern University of Science and Technology
, Shenzhen, China
Shufan Hu
Resources
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
2
Institute of Infection and Immunity, Taihe Hospital, Hubei University of Medicine
, Shiyan, China
Shan Li
https://orcid.org/0000-0001-8646-3193
Conceptualization, Data curation, Funding acquisition, Project administration, Resources, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing
1
State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, College of Biomedicine and Health, Huazhong Agricultural University
, Wuhan, China
2
Institute of Infection and Immunity, Taihe Hospital, Hubei University of Medicine
, Shiyan, China
3Department of Biochemistry,
SUSTech Homeostatic Medicine Institute, School of Medicine, Southern University of Science and Technology
, Shenzhen, China
Correspondence to Shan Li: [email protected], [email protected]
Disclosures: The authors declare no competing interests exist.
Shan Li is lead contact.
Received:
March 06 2025
Revision Received:
August 21 2025
Accepted:
September 22 2025
Online ISSN: 1540-8140
Print ISSN: 0021-9525
Funding
Funder(s):
National Key Research and Development Program of China
- Award Id(s): 2021YFD1800404
Funder(s):
National Science Fund for Excellent Young Scholars
- Award Id(s): 32322005
Funder(s):
National Natural Science Foundation of China
- Award Id(s): 32270197
Funder(s):
Hubei Provincial Natural Science Foundation
Funder(s):
Shiyan Innovation and Development Joint Foundation of China
- Award Id(s): 2025AFD194
Funder(s):
SUSTech
- Award Id(s): G030410001/2
© 2025 Liu et al.
2025
Liu et al.
This article is distributed under the terms as described at https://rupress.org/pages/terms102024/.
J Cell Biol (2026) 225 (1): e202503028.
Article history
Received:
March 06 2025
Revision Received:
August 21 2025
Accepted:
September 22 2025
Citation
Shuai Liu, Lina Ma, Ruiqi Lv, Liangting Guo, Xing Pan, Shufan Hu, Shan Li; Bacterial CipB is an exogenous receptor to drive the mitophagy-TFEB axis and promote pathogenesis. J Cell Biol 5 January 2026; 225 (1): e202503028. doi: https://doi.org/10.1083/jcb.202503028
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