Paneth cells secrete antimicrobial peptides (AMPs) to modulate composition of gut microbiota and host defense. AMPs are typically packaged into dense core vesicles (DCVs) and secreted into the intestinal lumen. However, the mechanisms underlying DCV biogenesis and secretion are still elusive. Here we identified that ERAdP was highly expressed in Paneth cells that acted as a sensor for a bacterial second messenger c-di-AMP. ERAdP deficiency caused impaired DCV biogenesis and dysfunction of Paneth cells. Mechanistically, by sensing c-di-AMP, ERAdP interacted with NLRP6 and further recruited ANXA2 onto the DCV membrane in Paneth cells. The ERAdP–NLRP6–ANXA2 complex facilitated DCV biogenesis, which enhanced antibacterial ability of intestines. Disruption of ERAdP–NLRP6–ANXA2 axis led to loss of DCVs in Paneth cells and increased susceptibility to bacterial infection. Of note, ERAdP–NLRP6–ANXA2 proteins were lowly expressed in IBD patients, and c-di-AMP treatment enhanced antibacterial capacity in antibiotic-treated mice. Our findings reveal that c-di-AMP stimulation might provide a potential therapeutic strategy for infectious disease and gut inflammation.
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December 26 2025
ERAdP facilitates biogenesis of dense core vesicles in Paneth cells to enhance intestinal defense
Cunzhen Li
,
Cunzhen Li
*
(Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing - original draft, Writing - review & editing)
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
7
University of Chinese Academy of Sciences
, Beijing, China
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Zhen Xiong
,
Zhen Xiong
*
(Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing)
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
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Deyuan Kong
,
Deyuan Kong
*
(Investigation)
4
The Affiliated Wuxi People’s Hospital of Nanjing Medical University, Wuxi Medical Center
, Wuxi, China
5Department of Immunology,
Jiangsu Key Lab of Cancer Biomarkers, Prevention and Treatment, Collaborative Innovation Center for Cancer Personalized Medicine, Nanjing Medical University
, Nanjing, China
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Yuwei Xu
,
Yuwei Xu
(Formal analysis, Methodology)
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
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Runyuan Wu
,
Runyuan Wu
(Formal analysis, Software)
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
7
University of Chinese Academy of Sciences
, Beijing, China
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Peikang Zhang
,
Peikang Zhang
(Software, Validation)
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
7
University of Chinese Academy of Sciences
, Beijing, China
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Ziqi Xiao
,
Ziqi Xiao
(Conceptualization, Data curation)
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
7
University of Chinese Academy of Sciences
, Beijing, China
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Hui Guo
,
Hui Guo
(Resources, Validation)
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
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Ying Du
,
Ying Du
(Data curation, Funding acquisition, Project administration, Resources, Software, Supervision)
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
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JinSong Li
,
JinSong Li
(Methodology)
8
Shanghai Key Laboratory of Molecular Andrology, Shanghai Institute of Biochemistry and Cell Biology, CAS Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences
, Shanghai, China
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Yun Chen
,
4
The Affiliated Wuxi People’s Hospital of Nanjing Medical University, Wuxi Medical Center
, Wuxi, China
5Department of Immunology,
Jiangsu Key Lab of Cancer Biomarkers, Prevention and Treatment, Collaborative Innovation Center for Cancer Personalized Medicine, Nanjing Medical University
, Nanjing, China
Yun Chen: [email protected]
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Qiang Zhan
,
2Departments of Gastroenterology,
The Affiliated Wuxi People’s Hospital of Nanjing Medical University, Wuxi People’s Hospital, Wuxi Medical Center, Nanjing Medical University
, Wuxi, China
3
Jiangsu Branch of the National Clinical Research Center for Digestive Diseases
, Wuxi, China
Qiang Zhan: [email protected]
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Zusen Fan
(Conceptualization, Funding acquisition, Resources, Supervision, Writing - original draft, Writing - review & editing)
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
2Departments of Gastroenterology,
The Affiliated Wuxi People’s Hospital of Nanjing Medical University, Wuxi People’s Hospital, Wuxi Medical Center, Nanjing Medical University
, Wuxi, China
6
Faculty of Pharmaceutical Sciences, Shenzhen University of Advanced Technology
, Shenzhen, China
7
University of Chinese Academy of Sciences
, Beijing, China
Correspondence to Zusen Fan: [email protected]
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Cunzhen Li
https://orcid.org/0009-0001-1026-5323
Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Validation, Visualization, Writing - original draft, Writing - review & editing
*
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
7
University of Chinese Academy of Sciences
, Beijing, China
Zhen Xiong
https://orcid.org/0009-0007-3970-0708
Conceptualization, Data curation, Formal analysis, Funding acquisition, Investigation, Methodology, Project administration, Resources, Software, Supervision, Validation, Visualization, Writing - original draft, Writing - review & editing
*
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
Deyuan Kong
https://orcid.org/0009-0002-8565-9690
Investigation
*
4
The Affiliated Wuxi People’s Hospital of Nanjing Medical University, Wuxi Medical Center
, Wuxi, China
5Department of Immunology,
Jiangsu Key Lab of Cancer Biomarkers, Prevention and Treatment, Collaborative Innovation Center for Cancer Personalized Medicine, Nanjing Medical University
, Nanjing, China
Yuwei Xu
https://orcid.org/0000-0002-6477-2857
Formal analysis, Methodology
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
Runyuan Wu
https://orcid.org/0009-0001-9749-569X
Formal analysis, Software
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
7
University of Chinese Academy of Sciences
, Beijing, China
Peikang Zhang
https://orcid.org/0009-0008-8305-1247
Software, Validation
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
7
University of Chinese Academy of Sciences
, Beijing, China
Ziqi Xiao
https://orcid.org/0009-0003-8618-3492
Conceptualization, Data curation
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
7
University of Chinese Academy of Sciences
, Beijing, China
Hui Guo
https://orcid.org/0000-0003-3901-6336
Resources, Validation
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
Ying Du
https://orcid.org/0009-0008-6072-2183
Data curation, Funding acquisition, Project administration, Resources, Software, Supervision
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
JinSong Li
https://orcid.org/0000-0003-3456-662X
Methodology
8
Shanghai Key Laboratory of Molecular Andrology, Shanghai Institute of Biochemistry and Cell Biology, CAS Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences
, Shanghai, China
Yun Chen
https://orcid.org/0000-0002-4118-362X
Data curation, Formal analysis, Resources
4
The Affiliated Wuxi People’s Hospital of Nanjing Medical University, Wuxi Medical Center
, Wuxi, China
5Department of Immunology,
Jiangsu Key Lab of Cancer Biomarkers, Prevention and Treatment, Collaborative Innovation Center for Cancer Personalized Medicine, Nanjing Medical University
, Nanjing, China
Qiang Zhan
https://orcid.org/0000-0001-5054-3028
Formal analysis, Resources
2Departments of Gastroenterology,
The Affiliated Wuxi People’s Hospital of Nanjing Medical University, Wuxi People’s Hospital, Wuxi Medical Center, Nanjing Medical University
, Wuxi, China
3
Jiangsu Branch of the National Clinical Research Center for Digestive Diseases
, Wuxi, China
Zusen Fan
https://orcid.org/0000-0002-7866-8217
Conceptualization, Funding acquisition, Resources, Supervision, Writing - original draft, Writing - review & editing
1
State Key Laboratory of RNA Science and Engineering, State Key Laboratory of Epigenetic Regulation and Intervention, Institute of Biophysics, Chinese Academy of Sciences
, Beijing, China
2Departments of Gastroenterology,
The Affiliated Wuxi People’s Hospital of Nanjing Medical University, Wuxi People’s Hospital, Wuxi Medical Center, Nanjing Medical University
, Wuxi, China
6
Faculty of Pharmaceutical Sciences, Shenzhen University of Advanced Technology
, Shenzhen, China
7
University of Chinese Academy of Sciences
, Beijing, China
Correspondence to Zusen Fan: [email protected]
Qiang Zhan: [email protected]
Yun Chen: [email protected]
*
C. Li, Z. Xiong, and D. Kong contributed equally to this paper.
Disclosures: The authors declare no competing interests exist.
Received:
May 21 2025
Revision Received:
September 28 2025
Accepted:
November 05 2025
Online ISSN: 1540-9538
Print ISSN: 0022-1007
Funding
Funder(s):
National Key R&D Program of China
- Award Id(s): 2020YFA0803501
Funder(s):
National Natural Science Foundation of China
- Award Id(s): 82530038,82130088,82271785
Funder(s):
Natural Science Foundation of Beijing
- Award Id(s): Z231100007223013,5222023
Funder(s):
China Association for Science and Technology
- Award Id(s): 2023QNRC001
Funder(s):
China Postdoctoral Science Foundation
- Award Id(s): 2020M680712,2022T150685
Funder(s):
Chinese Academy of Sciences
- Award Id(s): XDB0570101
Funder(s):
Shanghai Municipal Science and Technology Commission
Funder(s):
Basic Research Program of Jiangsu
- Award Id(s): BK20231146
Funder(s):
National Clinical Research Center for Digestive Diseases
© 2025 Li et al.
2025
Li et al.
This article is distributed under the terms as described at https://rupress.org/pages/terms102024/.
J Exp Med (2026) 223 (2): e20251051.
Article history
Received:
May 21 2025
Revision Received:
September 28 2025
Accepted:
November 05 2025
Citation
Cunzhen Li, Zhen Xiong, Deyuan Kong, Yuwei Xu, Runyuan Wu, Peikang Zhang, Ziqi Xiao, Hui Guo, Ying Du, JinSong Li, Yun Chen, Qiang Zhan, Zusen Fan; ERAdP facilitates biogenesis of dense core vesicles in Paneth cells to enhance intestinal defense. J Exp Med 2 February 2026; 223 (2): e20251051. doi: https://doi.org/10.1084/jem.20251051
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