Figure S2.

ERAdP conditional KO mice exhibits loss of DCVs and impaired antibacterial ability. (A) Cross strategy of Vil-Cre and Cnep1r1fl/fl mice. (B) DNA electrophoresis for loxP and Vil-Cre knock-in validation. (C)Cnep1r1 FISH of SI and colon of WT and Cnep1r1ΔIEC mice. Red: Cnep1r1 probes; blue: DAPI. Scale bar: 70 μm. (D) Diagram of four patterns of Paneth cells normal (D0), disordered (D1), depleted (D2), and diffuse (D3). (E–I) Quantification of DCV numbers per Paneth cell (E), goblet cells per villus (F), ISC per crypt (G), Ki67+ cells per crypt (H), and Lyz+ puncta per crypt (I) of WT and Cnep1r1ΔIEC mice (n = 6 mice for each group). (J) Immunofluorescence staining of ileums from littermate WT and Cnep1r1ΔIEC mice. Red: lysozyme, green: WGA, and blue: DAPI. Scale bar: 20 μm. (K) Western blot for lysozyme and DEFA5 of ileal intestinal mucus layer. The intestinal contents from a 5-cm ileal segment were flushed with GuHCl and scraped using glass slides, followed by supernatant collection for western blot analysis. TFF3 secreted by goblet cells was used as a loading control. (L) AMP expression analysis with RNAseq of Cnep1r1ΔIEC versus WT mice. (M) qPCR detection of ileal luminal commensal bacteria classified by phylum (n = 6 mice for each group). (N) Schematic diagram of S. Typhimurium stimulation and detection. Data in E–I and M are shown as means ± SEM; significance was determined by unpaired two-tailed Student’s t test (*P < 0.05; ***P < 0.001; ns, not significant). Data in B, C, and E–M are representative of at least three independent experiments. Source data are available for this figure: SourceData FS2.

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