KIF1Bβ is a kinesin-3 family anterograde motor protein essential for neuronal development, viability, and function. KIF1Bβ mutations have previously been reported in a limited number of pedigrees of Charcot-Marie-Tooth disease type 2A (CMT2A) neuropathy. However, the gene responsible for CMT2A is still controversial, and the mechanism of pathogenesis remains elusive. In this study, we show that the receptor tyrosine kinase IGF1R is a new direct binding partner of KIF1Bβ, and its binding and transport is specifically impaired by the Y1087C mutation of KIF1Bβ, which we detected in hereditary neuropathic patients. The axonal outgrowth and IGF-I signaling of Kif1b−/− neurons were significantly impaired, consistent with decreased surface IGF1R expression. The complementary capacity of KIF1Bβ-Y1087C of these phenotypes was significantly impaired, but the binding capacity to synaptic vesicle precursors was not affected. These data have supported the relevance of KIF1Bβ in IGF1R transport, which may give new clue to the neuropathic pathogenesis.
Kinesin superfamily proteins (KIFs) largely serve as microtubule molecular motors that transport essential cellular materials to specific destinations, while very little is known regarding how they regulate the cellular signal transduction cascades specifically involved in important cellular functions (Hirokawa et al., 2010; Hirokawa and Tanaka, 2015). KIF1Bβ is a kinesin-3 family member that plays an indispensable role in neuronal survival, morphogenesis, and function (Zhao et al., 2001). Kif1b−/− mice die soon after birth due to apnea. The brains of Kif1b−/− mice are reduced in volume by ∼10% compared with the brains of WT littermates. The cellularity, organization, and the development of the brain stem nuclei and commissural fibers are also significantly decreased. The dissociated hippocampal neuron culture shows severe neuronal death by day in vitro (DIV) 3, and KIF1Bβ expression restores neuron number. However, a distinct splicing isoform with a totally different cargo-binding domain, KIF1Bα, cannot restore the neuron number. In contrast, KIF1Bβ and its closely related motor protein KIF1A both transport synaptic vesicle precursors including synaptophysin, SV2, and synaptotagmin down the neuronal axons (Zhao et al., 2001) by binding to the dynamic adaptors Rab3A-GTP and differentially expressed in neoplastic versus normal cells protein (DENN)/MAPK-activating death domain (MADD; Niwa et al., 2008). In oligodendrocytes, KIF1Bβ is essential for Mbp and 36k mRNA localization, and it has a role in the development of myelinated axons in the central and peripheral nervous systems (Lyons et al., 2009).
Interestingly, the phenotypes of Kif1b−/− neurons are much more severe than those deficient of presynaptic proteins or adaptor proteins such as synaptophysin, synaptotagmin, SV2A or 2B, and Rab3A (Geppert et al., 1994a,b; McMahon et al., 1996; Crowder et al., 1999; Janz et al., 1999), suggesting that there may be a novel cargo of KIF1Bβ other than synaptic vesicle precursors that essentially regulates neuronal survival and axonal outgrowth.
Insulin-like growth factors (IGFs) control the growth and differentiation of neural cells, enhancing dendrite extension, axon elongation, synaptogenesis, spine formation, and myelination. IGF1R dominantly mediates the growth-promoting actions of IGF-I and IGF-II (O’Kusky and Ye, 2012). Igf-I–knockout (KO) mice and Igf1r-KO mice tend to die immediately after birth from respiratory failure, showing reduced brain sizes, muscle hypoplasia, reduced neuron numbers, and impaired commissural fiber formation (Liu et al., 1993; Beck et al., 1995). IGF1R is a heterotetrameric glycoprotein with paired disulfide-linked extracellular α- and transmembrane β-subunits (Baron-Van Evercooren et al., 1991). The binding of the α-subunit to IGF-I leads to the activation of the β-subunit kinase domain and subsequently transduces the signal to downstream MAPK and PI3K–Akt pathways (Kuemmerle and Murthy, 2001).
IGF-I signaling was reported to play a role in neuronal survival in vivo and in vitro. Significant neuronal loss was reported in Igf-I–KO mice (Beck et al., 1995; Camarero et al., 2001) and IGF1R-deficient mice (Liu et al., 2009). In contrast, IGF-I–overexpressing transgenic mice showed a substantial increase in the number of brain neurons (Dentremont et al., 1999; O’Kusky et al., 2000; Hodge et al., 2005). IGF1R is required for the IGF-I–activated Akt survival cascade in neuronal cells (Dudek et al., 1997; Lu et al., 2008). Furthermore, IGF-I stimulates the axonal outgrowth of motor and sensory neurons (Özdinler and Macklis, 2006; Scolnick et al., 2008). Commissural fibers of IGF-I−/− mouse brains are greatly reduced in area and thickness compared with WT littermates (Beck et al., 1995). The IGF1R-mediated PI3K pathway is essential for the establishment of the polarity of hippocampal neurons (Sosa et al., 2006) and for regulating membrane expansion at the nerve growth cone, which is necessary for axonal outgrowth (Laurino et al., 2005). MAPK signaling has been also reported to promote axonal outgrowth (Forcet et al., 2002). Changes in serum IGF levels were found to be associated with neurodegeneration (Busiguina et al., 2000). Recent research also showed that treatment with recombinant human IGF-I ameliorates the symptoms of a mouse model of Rett Syndrome with IGF-I deficiency (Castro et al., 2014). Thus, the IGF-I signaling pathway is a potential therapeutic target for neurological disorders.
Charcot-Marie-Tooth (CMT) disease is one of the most common inherited peripheral neuropathies, with a prevalence of 1:2,500 (Skre, 1974) as the result of summing up the mutations in >30 genes (Saporta et al., 2011); this condition is also known as hereditary motor and sensory neuropathy. CMT disease is divided into two main types on the basis of electrophysiological properties and neuropathology: CMT1 and CMT2. Demyelinating CMT1 has a nerve conduction velocity <38 m/s, and axonal CMT2 has nerve conduction velocities >38 m/s. For CMT1, axonal loss occurs largely due to affected Schwann cells, whereas Mitofusin 2 (MFN2) mutations, which impair mitochondrial fusion and ER–mitochondria tethering, are responsible for the most common known axonal form of CMT2A2 (Züchner et al., 2004; Kijima et al., 2005; Lawson et al., 2005; Baloh et al., 2007). Although a KIF1B mutation in the same genomic interval was the first identified in a pedigree with CMT2A, only a few pedigrees with KIF1Bβ mutation for CMT2A1 have been reported until recently. We previously reported one CMT2A1 pedigree with the clinical mutation of KIF1Bβ-Q98L in the middle of the P loop, which is the conserved ATP binding site of the kinesin motor. This mutation significantly reduced ATPase activity, resulting in the perinuclear accumulation of the mutant protein (Zhao et al., 2001). In addition, compared with WT mice, 1-yr-old Kif1b heterozygous mice had significantly reduced retention times in the rotarod test (Zhao et al., 2001). The mutation E758D in KIF1Bβ was identified in a patient diagnosed with hereditary motor neuropathies with pyramidal signs, and the mutation V1358A was found for CMT2 with a limited penetrance (Drew et al., 2015).
In this study, we propose that the IGF1R-containing vesicle is a novel cargo of KIF1Bβ. We show that the IGF1Rβ subunit directly binds to the 885–1,410-aa domain located in the stalk domain of KIF1Bβ protein and is transported down the axon to augment axonal outgrowth. Furthermore, we detected the a3260g (Y1087C) mutation of human Kif1bβ gene in the patients from two independent pedigrees of hereditary neuropathy suffering from CMT2A symptoms including progressive muscle weakness and slight central nervous system defects. We show cell biological evidence that this Y1087C mutation significantly affects the IGF1R binding capacity of KIF1Bβ and that KIF1Bβ Y1087C is impaired in complementing the defects in IGF1R transport and axonal outgrowth of Kif1b−/− mouse primary hippocampal neurons. These data will newly propose that KIF1Bβ as a responsible gene preventing hereditary axonopathy through the association of its specific binding domain with IGF1R, which enhances the expression of IGF1R and the IGF-I–mediated signaling in the peripheral axon.
KIF1B is essential for axonal outgrowth
We previously reported that the corpus callosum of Kif1b−/− mice was significantly malformed (Zhao et al., 2001), which was further confirmed by histological analyses (Fig. S1, A–D). We hypothesized that this is because of the impairment in axonal outgrowth. To evaluate it, we compared axonal outgrowth in vitro using dissociated hippocampal neurons from 17.5–d postcoitum (dpc) mouse brains. TagRFP was transiently transfected to show the morphology of single neurons at 1 d before the observation. The cells were then fixed and visualized by confocal microscopy using the 568-nm channel. We found that axonal outgrowth was significantly impaired in Kif1b−/− neurons at DIV2–3 (Fig. 1, A and B). In the knockdown experiments using the KIF1Bα- and -β–specific miRNA vectors, we found that the β-isoform of KIF1B was specifically responsible for this impairment in axonal outgrowth, which could be rescued by expression of RNAi-resistant KIF1Bβ (Fig. 1, C–E; and Fig. S1, E and F). Using terminal deoxynucleotidyl transferase dUTP nick-end labeling (TUNEL) staining of dissociated hippocampal neuron culture at DIV3, we found that neurite-bearing Kif1b−/− neurons were not largely apoptotic, excluding the nonspecific effect of apoptosis as the cause of the axonal elongation phenotype (Fig. 1 F). However, the ratio of apoptotic cells in Kif1b−/− neurons was significantly higher than that in Kif1b+/+ neurons (Fig. 1 G), consistent with our previous data (Zhao et al., 2001).
IGF1R is specifically associated with KIF1Bβ
Considering that these phenotypes were most similar to those of IGF1R-KO mice (Liu et al., 1993, 2009), we sought to investigate whether IGF1R is a novel cargo of KIF1Bβ. Because the nascent IGF1R protein undergoes proteolysis to generate an N-terminal extracellular α-subunit (IGF1Rα) that has a ligand-binding domain and a C-terminal transmembrane β-subunit (IGF1Rβ) that is extracellularly linked to the α-domain by disulfide bonds and possesses an intracellular catalytic domain (Massagué and Czech, 1982), the intracellular domain (ICD) of IGF1Rβ is considered the only portion exposed to the cytoplasm.
First, we conducted yeast two-hybrid analysis to explore the direct binding capacity between KIF1Bβ and IGF1R. Using the ICD of IGF1Rβ as the prey, blue colonies indicating a positive signal were successfully formed with the indicated bait fragments of the mouse KIF1Bβ stalk domain (Fig. 2 A). The binding domain of KIF1Bβ was thus minimized to 885–1,410 aa. However, mouse KIF1A 836–1,346 aa, which was homologous to mouse KIF1Bβ 885–1,410 aa, did not result in blue colony formation (Fig. S2, A and B), suggesting that IGF1Rβ specifically binds to KIF1Bβ instead of KIF1A. The stalk domain of KIF1Bβ shares a high homology with the corresponding domain of KIF1A, with a sequence identity of 65%. Because we found a nonconserved 20-aa stretch just before the core-binding residue Tyr1087 (Fig. S2 A), it is reasonable to hypothesize that these two motors have different binding specificities.
Second, this binding was confirmed by vesicle immunoprecipitation (IP) using newly established Kif1bβ-EGFP–knock-in mice, of which hippocampal neurons represented axonal transport of fluorescent organelles at ∼1 µm/s (Fig. S2, C–F; Video 1). We immunoprecipitated the whole-brain lysates of adult Kif1bβGFP/GFP and Kif1bβ+/+ mice using an anti-GFP antibody. The immunoprecipitates were labeled against GFP, KIF1Bβ, and IGF1Rα, and this labeling specifically showed the association between KIF1Bβ-EGFP and IGF1R-associated vesicles (Fig. 2 B).
Third, we conducted a vesicle coflotation assay. Adult WT mouse brains were homogenized in Hepes-sucrose buffer, and the S1 fraction was subjected to Nycodenz density-gradient differential centrifugation (Fig. 2 C). The results showed that IGF1R and synaptophysin cofloted with KIF1Bβ.
To evaluate whether the interaction is direct or not, we next performed a pulldown assay using purified recombinant proteins. FLAG-tagged ICD of IGF1Rβ purified from the HEK293 cell could significantly bind to purified GST-tagged KIF1Bβ 885–1,410 aa compared with the purified GST-only as a negative control (Fig. 2 D).
Finally, we conducted live imaging. KIF1Bβ-EGFP and signal peptide (SP)-IGF1Rβ-RFP expression vectors were cotransfected into dissociated hippocampal neurons at DIV5, and the neurons were observed 2 d later using a spinning-disk confocal microscope to assess the comigration of these two proteins (Fig. 2 E and Video 2). Kymograph analyses suggested that the comigration speeds of these vesicles were ∼1 µm/s (Fig. 2 F), comparable with the previously measured velocity of KIF1Bβ (Zhao et al., 2001). To confirm that IGF1R is transported by KIF1Bβ, we transfected Kif1b+/+, Kif1b+/−, and Kif1b−/− hippocampal neurons with SP-IGF1Rβ-RFP and compared the number of anterograde transport of IGF1R. Kif1b+/− neurons showed less transport than Kif1b+/+ neurons (Fig. S2, G–J). Furthermore, little transport was observed in Kif1b−/− neurons. These data indicate that IGF1R requires KIF1Bβ to be transported down the axon. Altogether, these data suggest that the stalk domain of KIF1Bβ is associated with membrane vesicles containing IGF1R through the ICD of IGF1Rβ.
Decreased surface expression of IGF1R in Kif1b−/− neurons
To explore the physiological relevance of KIF1B to the IGF1R distribution, we dissected hippocampal neurons from Kif1b+/+ and Kif1b−/− mouse embryos at 17.5 dpc, cultured them for 2 d upon dissociation, and then fixed and stained them with an anti-IGF1Rα antibody with permeabilization. We found that the axonal but not the total amount of the IGF1R was significantly decreased in the Kif1b−/− neurons at DIV2 (Fig. S3, A–C). To evaluate the surface expression of IGF1R, we next performed immunostaining without permeabilization. As a result, the surface IGF1R levels both in the cell body and in the brightest neurite of Kif1b−/− hippocampal neurons were also significantly lower than those of Kif1b+/+ neurons at an early developmental stage (Fig. 3, A and B).
Because the precise quantification of the transport was difficult in the dissociated culture due to the crossing and overlapping of the neurites, we next quantified the amount of IGF1R using microfluidic chambers with 450-µm-long microgrooves to specifically examine the distal axons. The neurons were plated in the left main channel of the device, and their axons were allowed to extend into the microgrooves for ∼1 wk until both Kif1b+/+ and Kif1b−/− axons reached the right ends. The chamber was then carefully detached from the coverslip, and the cells attached to the cover glasses were fixed, permeabilized with saponin, and stained with the anti-IGF1Rα and βIII-tubulin antibodies (Fig. 3 C). The results of the statistical analysis revealed that axonal IGF1Rα staining in Kif1b−/− neurons was significantly lower than that in Kif1b+/+ neurons (Fig. 3 D).
To confirm the reduction of surface expression of IGF1R in Kif1b−/− neurons, we next conducted a surface biotinylation assay using cortical neurons of Kif1b+/+ and Kif1b−/− mouse embryos at 17.5 dpc. The neurons were cultured in 10-cm dishes for ∼7 d. The membrane proteins were biotinylated, prepared for immunoblotting (IB), and normalized with the β-actin levels of the input. The IGF1R level in the cell surface fraction of Kif1b−/− neurons was significantly lower than that of Kif1b+/+ neurons (Fig. 3 E). The statistical analysis was obtained from eight repetitions of the IB results of three independent experiments (Fig. 3 F). Interestingly, KIF1Bβ was detected in the surface fractions. Considering that another molecular motor cytoplasmic dynein has been reported to be associated with the plasma membrane and tethers microtubules, KIF1Bβ might be recruited by these cortically-tethered microtubules (Hendricks et al., 2012). We also noted that the total amount of IGF1R of Kif1b−/− neurons tended to slightly decrease at DIV7, but its amplitude was substantially less than that in the cell surface fractions. This finding suggests the existence of a self-activation loop for IGF1R expression, possibly through the PKC signaling pathway (Ververis et al., 1993), which may secondarily down-regulate IGF1R transcription because of impaired downstream signaling during middle developmental stage.
To investigate whether the impairment in axonal outgrowth in the Kif1b−/− neuron is correlated with the reduction of surface expression of IGF1R, we treated Kif1b+/+ and Kif1b−/− neurons with a moderate level of IGF-I. As expected, Kif1b−/− neurons were insensitive to IGF-I, and no significant axonal elongation was observed, whereas Kif1b+/+ neurons treated with IGF-I successfully developed the axons (Fig. 3, G and H). These data suggest that KIF1Bβ is essential for the surface expression of IGF1R in the axon and plays an essential role in the axon development.
Impaired IGF-I signaling in KIF1Bβ-deficient neurons
To examine the possible changes in IGF1R signal transduction caused by KIF1B deficiency, dissociated hippocampal neurons were cultured for 3 d, starved for 2 h without serum or B27 supplement, and stimulated for 5 min with 5 nM IGF-I. The cells were then fixed and subjected to immunostaining using an anti-pAkt antibody. Upon IGF-I stimulation, the pAkt level in the Kif1b+/+ cell body was substantially enhanced, while this enhancement was significantly impaired in the Kif1b−/− neuron (Fig. 4, A and B). We next investigated the change in pERK levels as an indicator of MAPK signaling downstream to the IGF1R signaling. IGF-I stimulation significantly increased the pERK levels in the Kif1b+/+ neurons in 5 min compared with those in Kif1b−/− neurons (Fig. S4, A and B).
The responsible isoform of KIF1B was further specified into KIF1Bβ using RNA interference. WT dissociated hippocampal neurons were electroporated with the TurboRFP-conjugated miRNA vector for the control or KIF1Bβ, plated, cultured for 4 d, and then starved for 2 h. The cells were treated with or without 10 nM IGF-I stimulation for 5 min and then fixed and immunostained using the anti-pAkt and anti-pERK antibodies. KIF1Bβ knockdown led to significant reduction in pAkt and pERK levels both in the axon tips and in the cell bodies (Fig. 4, C and D; and Fig. S4, C and D).
We further evaluated whether the impairment in IGF1R/PI3K signal transduction affected the axon outgrowth in Kif1b−/− neurons. Kif1b−/− neurons transfected with constitutively active Ras V12, which is upstream to the PI3K–Akt and ERK signaling (Castellano and Downward, 2011; Tanaka et al., 2016), showed a significant increase of the axon length compared with the Kif1b−/− neurons at DIV3 (Fig. 4, E and F). Interestingly, the effect of Ras V12 was more evident in the Kif1b−/− neurons than Kif1b+/+ neurons. These data indicate that KIF1Bβ is essential for IGF1R-mediated PI3K and ERK signaling and axonal outgrowth.
KIF1Bβ-Y1087C mutation detected in patients affects IGF1R binding capacity
Coincidentally, we identified two hereditary neuropathy pedigrees carrying the same KIF1Bβ mutation Y1087C (Fig. 5, A and B; Table 1) by exome sequencing of 33 CMT2/neuropathy-related genes (Table 2). According to the in silico pathogenicity evaluation programs PP2 and SIFT, this KIF1Bβ mutation was the only one with disease-causing capacity in the single-nucleotide polymorphisms (SNPs) within these 33 genes including MFN2.
Because Tyr1087 is located in the middle of the IGF1R minimal binding sequence (885–1,410 aa) as above, we conducted GST-pulldown assays to investigate whether this Y1087C mutation affected the binding capacity of KIF1Bβ to IGF1R and synaptic vesicle precursors. WT adult mouse brain lysates were pulled down against GST-fused mouse KIF1Bβ 885–1,410 aa with or without the Y1087C mutation. The mutated KIF1Bβ 885–1,410 aa (Y1087C) fragment tended to exhibit a lower binding capacity to both of the IGF1R subunits than WT KIF1Bβ 885–1,410 aa. However, the binding capacities to the synaptic vesicle precursor protein synaptophysin and the adaptor protein DENN/MADD were likely unaltered by the Y1087C mutation (Fig. 5, C and D).
To determine whether IGF1R and synaptic vesicle precursors are transported on the same vesicles, we then conducted fluorescence immunocytochemistry of WT dissociated hippocampal neurons against DENN/MADD and IGF1R and observed them using superresolution structured illumination microscopy (SR-SIM). DENN/MADD and IGF1R scarcely colocalized with each other (Fig. 5, E–G). These data collectively suggest that IGF1R directly binds to a specific domain in KIF1Bβ stalk domain including Tyr1087 and is transported independently from synaptic vesicle precursors. The mutation Y1087C in KIF1Bβ critically and specifically affected the IGF1R transport and, accordingly, may affect downstream IGF-I signaling to enhance the neuropathic symptoms.
KIF1Bβ-Y1087C is impaired in complementing KO neuron phenotypes
To further investigate the functional deficits of the KIF1Bβ-Y1087C mutation, we conducted rescue experiments using Kif1b−/− hippocampal neurons. First, to assess axon length, dissociated neurons were transfected using the respective EGFP-tagged expression vectors together with a TagRFP expression vector at DIV1, fixed at DIV3, and analyzed for axon lengths using confocal microscopy observations with the 568-nm excitation. Transfection of mouse WT KIF1Bβ restored axonal outgrowth. However, transfection of KIF1Bβ-Y1087C and KIF1Bβ-Q98L mutants, KIF1Bα, and KIF1A significantly failed in this complementation capacity compared with the WT KIF1Bβ, while KIF1Bβ-Y1087C could partially rescue it (Fig. 6 A). The expression of recombinant proteins of the predicted lengths was confirmed by IB (Fig. 6 B), and the statistical analyses of the axon lengths are shown in Fig. 6 C. Knockdown rescue experiments also confirmed the dysfunction of KIF1Bβ-Y1087C (Fig. S1, E and F). Knockdown-resistant KIF1Bβ WT successfully rescued the impairment in axon outgrowth, while the neurons transfected with KIF1Bβ-Y1087C showed shorter axon lengths than those with WT.
To evaluate whether the impairment of axon outgrowth in the neurons expressing KIF1Bβ-Y1087C was caused by the impaired IGF1R/PI3K signal transduction, we next quantified the pAkt signals in the neurons transfected with miRNA and knockdown-resistant KIF1Bβ. Knockdown of KIF1Bβ caused a reduction in the pAkt levels in the axon shaft when stimulated with IGF-I, while KIF1A knockdown as a control showed no significant changes, which was consistent with the results mentioned above (Fig. 6, D and E). Besides, the neurons expressing KIF1Bβ-Y1087C also showed a significant reduction in pAkt levels, whereas KIF1Bβ-WT successfully rescued this reduction. Considering that the total Akt level was not changed in any condition (Fig. S5, A and B), these data suggest that IGF1R-mediated PI3K signal transduction was incomplete in the Kif1b−/− neurons expressing KIF1Bβ-Y1087C and thus, the incomplete signaling cascade might impair the axon outgrowth.
Y1087C mutation impaired the IGF1R transport
As we mentioned, the impairment in axon outgrowth and the reduction of pAkt levels in Kif1b−/− neurons may be induced by the decreased transport of IGF1R. Likewise, we hypothesized that KIF1Bβ-Y1087C could not transport IGF1R sufficiently. To compare the activity of KIF1Bβ mutants for the surface presentation of IGF1R, Kif1b−/− hippocampal neurons were cultured at a moderate density, transfected with 3× FLAG-tagged expression vectors together with a TagRFP expression vector at DIV1, fixed at DIV4, and immunostained using an anti-IGF1Rα antibody without permeabilization. Kif1b+/+ neurons were also stained as a positive control. The axonal surface IGF1R expression levels at ∼100 µm distal from the cell body were analyzed. The overexpression of mouse KIF1Bβ significantly rescued the axonal IGF1R expression level compared with control, while other constructs had lesser capacity for this complementation, similar with the case of axonal outgrowth above (Fig. 7, A and B). The expression of recombinant proteins of the predicted lengths was confirmed by IB (Fig. 7 C), and the statistical analysis of the axonal surface IGF1R levels at 100 µm distal from the cell body is shown in Fig. 7 D. These data indicate that the Kif1b−/− neurons expressing KIF1Bβ-Y1087C could not still sufficiently transport IGF1R.
To obtain further confirmation, we next observed the IGF1R transport in the Kif1b−/− hippocampal neurons expressing KIF1Bβ WT or Y1087C with live imaging. Because of the reduction in endogenous KIF1Bβ and IGF1R levels, the Kif1b−/− neurons provided a very suitable system for live imaging of transfected proteins (Fig. 8, A–C). As a result, the number of transported IGF1R-containing vesicles was not rescued in the neurons expressing KIF1Bβ-Y1087C, whereas it was rescued in the neurons expressing WT (Fig. 8 D). To obtain further insight of the mutant, we analyzed the transport quantitatively. The ratio of anterograde over retrograde transports of IGF1R was not significantly altered, suggesting that the retrograde transport was proportionally impaired because of the reduction of IGF1R levels in the distal part of the axon in the neurons expressing the Y1087C mutant (Fig. 8 E). The velocity of KIF1Bβ was not significantly different either between WT and Y1087C or between the KIF1Bβ vesicles with and without IGF1R (Fig. 8 F). These data indicate that neither Y1087C mutation or the IGF1R interaction affected the motor activity. However, the ratio of comigrating over total KIF1Bβ-containing vesicles was significantly reduced in the neurons expressing Y1087C (Fig. 8 G). These results suggested that Y1087C could not gain the sufficient affinity to IGF1R. Thus, KIF1Bβ-Y1087C failed in transporting IGF1R to the axon. These mutation analyses in vivo confirmed that the IGF1R is a novel cargo of KIF1Bβ, and a disorder of this transport inhibited the IGF-I signaling and proper axon outgrowth. Because KIF1Bβ-Y1087C mutation in the hereditary neuropathy patients partially but significantly affected these capacities, it probably enhances the pathogenesis of neuropathic symptoms in those patients.
KIF1Bβ has been reported to transport synaptic vesicle precursors including synaptophysin, SV2, and synaptotagmin through the regulatory adaptors Rab3-GTP and DENN/MADD (Niwa et al., 2008). KIF1Bβ also transports dendritically localized mRNPs and is recruited to synapses in an activity-dependent manner (Charalambous et al., 2013). In oligodendrocytes, KIF1Bβ is involved in the localization of Mbp and 36k mRNA and is essential for the development of myelinated axons (Lyons et al., 2009). However, transport defects in these cargos cannot explain the phenotypes of Kif1b−/− neurons, i.e., severe apoptosis and impaired axonal outgrowth; therefore, the existence of an unknown cargo promoting cell viability and axonal outgrowth has long been expected.
In this study, we first identified the association of IGF1R with KIF1Bβ using yeast two-hybrid, vesicle IP, coflotation, pulldown assay, and comigration experiments, and we also detected impairments in the surface presentation of IGF1R in Kif1b−/− neuronal axons, suggesting that IGF1R is a novel cargo of KIF1Bβ. These data clarify some of the missing information. IGF1R specifically bound to KIF1Bβ 885–1,410 aa, and coincidentally, we identified human pedigrees of CMT2A carrying the Y1087C mutation of KIF1Bβ, which turned out to specifically impair its binding capacity to IGF1R.
We have established a mechanistic link between KIF1Bβ-mediated axonal outgrowth and the IGF-I signaling pathway and propose the hypothesis that KIF1Bβ transports IGF1R in axons to stimulate axonal outgrowth. Because cell density can also affect cell outgrowth, in our research, a higher cell density was applied to compensate for apoptosis and its effect on axonal outgrowth due to the lowered cell density (Fig. 1 F). Because dissociated hippocampal culture contains growth factor–secreting cells such as astrocytes, a higher density might provide a sufficient concentration of growth factors for the survival of Kif1b−/− neurons. Furthermore, a low transfection efficiency of hippocampal neurons and evidence for impaired responsiveness to exogenous IGF-I (Fig. 4) suggested that the rescue of axonal outgrowth was primarily caused in a cell-autonomous way to increase the responsiveness to IGF-I.
CMT2 is defined as axonal hereditary neuropathy with a normal range of axon conduction speeds but exhibits severe axonal degeneration (Bucci et al., 2012). There are several pedigrees of CMT2A with MFN2 point mutations (Züchner et al., 2004; Kijima et al., 2005; Lawson et al., 2005; Baloh et al., 2007); however, MFN2 as well as >30 related genes were intact in our newly identified CMT2A pedigrees. Both of these pedigrees coincidentally carried the KIF1Bβ mutation of Y1087C, which strengthens the previously known mechanistic link between CMT2A and KIF1Bβ (Zhao et al., 2001; Drew et al., 2015). We present in vitro evidence that this mutation functionally impairs the capacity of KIF1Bβ for specific binding and transport of IGF1R down the axons to affect IGF-I/IGF1R signaling, in contrast with previous negative predictions (Ho et al., 2017). Our in vitro evidence suggested that this mutation is at least responsible for increasing susceptibility to neuropathies by reducing the IGF-I signal transduction.
IGF-mediated MAPK and PI3K–Akt signal transduction has long been known to be essential for neuronal survival and axonal development (Beck et al., 1995; Dudek et al., 1997; Camarero et al., 2001; Özdinler and Macklis, 2006; Scolnick et al., 2008; Liu et al., 2009). Besides, changes in serum IGF levels were found to be associated with neurodegeneration (Busiguina et al., 2000). We have shown in this study that the IGF-mediated signaling is significantly affected by KIF1B deficiency (Figs. 4 and S4), and overexpression of Ras V12 that directly stimulates MAPK and PI3K signaling pathways (Kuemmerle and Murthy, 2001; Castellano and Downward, 2011) could rescue the axonal outgrowth phenotype (Fig. 3). Thus, deficiency in IGF1R signaling could provide a better explanation of the cause of neurodegeneration and impaired axonal elongation in Kif1b−/− mice. These data will also stimulate future translational research into the activation of the KIF1Bβ/IGF1R cascade to protect neurons against hereditary neuropathies.
Interestingly, IGF1R did not bind to the corresponding region of KIF1A (Fig. S2). This finding was consistent with the fact that KIF1A expression did not restore either axonal outgrowth or axonal surface IGF1R expression in Kif1b−/− neurons (Figs. 6 and 7). Although KIF1A is very similar to KIF1Bβ and synergistically transports synaptic vesicle precursors (Niwa et al., 2008), we recently proposed that instead of KIF1Bβ, only KIF1A transports the nerve growth factor (NGF) receptor TrkA through the Rab3-GTP adaptor (Tanaka et al., 2016). As we have identified in this study that only KIF1Bβ transports the IGF-I receptor IGF1R by the direct binding of the stalk domain, KIF1A and KIF1Bβ may complementarily transport different receptor tyrosine kinases down the axons to respectively augment the NGF and IGF signaling pathways. Although both kinesin-3 motors are highly expressed in adult brains, dorsal root ganglion neurons express KIF1Bβ only in the juvenile or regenerating stages and solely express KIF1A in the mature stage (Takemura et al., 1996; Gumy et al., 2011; Tanaka et al., 2016). Furthermore, we previously identified that another kinesin-3 motor, KIF16B, transports fibroblast growth factor receptor for stem cell differentiation and proliferation (Ueno et al., 2011). Because FGF-, IGF-, and NGF-mediated transmembrane receptor tyrosine kinase pathways have been reported to sequentially and cooperatively enhance neuronal differentiation and survival through modality-specific adaptor proteins (Recio-Pinto et al., 1986; Nakafuku et al., 1992; Jones et al., 2003), the down-regulation of KIF1Bβ in adult peripheral nervous system may provide a hint to the answers of long-standing questions such as why the symptoms of CMT disease are peripheral dominant even though the responsible genes are ubiquitously expressed (Sullivan et al., 2008; Bucci et al., 2012) and why axonal regeneration and axonal outgrowth are generally suppressed in the adult central nervous system (Raivich and Makwana, 2007; Wu et al., 2007; Huebner and Strittmatter, 2009; Luigetti et al., 2016). Among these three kinesin-3 motors, the direct interaction of KIF1Bβ with the cargo was first identified in this study, and it is unique compared with the other two kinesin-3 motors, suggesting divergence in the transport regulation mechanism.
Materials and methods
Kif1b-KO mice have been previously described (Zhao et al., 2001). Mouse brain histology was performed using paraffin sections as previously described (Zhao et al., 2001). Kif1bβ-EGFP–knock-in mice were generated by using the gene-targeting vector (Fig. S2), which was electroporated in C57BL/6N strain mouse–derived RENKA embryonic stem cells (kindly provided by K. Sakimura, Niigata University, Niigata, Japan) selected for neoR homologous recombinant clones by Southern blotting using a DNA radioprobe (a Kif1b genomic fragment 130,394–131,090 nt; RefSeq expression no. NC_000070.6) according to methods previously described (Mishina and Sakimura, 2007). C57BL/6J, C57BL/6N, and ICR mice were purchased from CLEA Japan. The KO and knock-in mice were maintained in a C57BL/6J or C57BL/6N background in a specific pathogen-free environment under a 14/10-h light/dark cycle. All animal experiments were conducted under The University of Tokyo’s restrictions and permissions regarding animal experimentation (notification numbers 1722T124, 1722T126, M-P15-118, and M-P15-119).
For genotyping PCR of Kif1b-KO mice, tail biopsy lysates were subjected to PCR as previously described (Zhao et al., 2001). For that of Kif1bβ-EGFP knock-in mice, the lysates were subjected to PCR using AmpliTaq DNA polymerase (PerkinElmer) on a thermal cycler (GeneAmp PCR system 9700; PerkinElmer). For amplifying the knock-in allele, the samples were cycled at 94°C for 30 s, 62°C for 30 s, and 72°C for 30 s for 30 cycles using the following primer sets: EGFP-F, 5′-CCATGGTGAGCAAGGGCGAGGAGCTGTTCA-3′, and EGFP-R, 5′-TCATGTGGTCGGGGTAGCGGCTGAAGCACT-3′, to reveal a 240-bp product. For the WT allele, they were cycled at 94°C for 30 s, 56.4°C for 30 s, and 72°C for 30 s for 30 cycles using the following primer sets: KIF1Bβ-F, 5′-TGTTTAGGAGCGTAGAAGCCTGG-3′, and KIF1Bβ-R, 5′-GTGTGAGTGTGAGTGTGTATGGACG-3′, to reveal a 386-bp product.
Expression and knockdown vectors
To construct mouse IGF1R deletion expression vectors, mouse Igf1r cDNA (IMAGE: 8861891; Open Biosystems) was amplified by PCRs using KOD polymerase (Toyobo) and KAPA HiFi DNA polymerase (KAPA Biosystems). For comigration experiments, SP (the first 30 residues of IGF1R) and Igf1rβ were amplified with PCR and ligated into the pTagRFP-N (Evrogen) vector using the BglII and HindIII sites or HindIII and EcoRI sites, respectively. Mouse Kif1bβ cDNA (Zhao et al., 2001), mouse Kif1a cDNA (Niwa et al., 2008), and human KIF1Bα cDNA (Niwa et al., 2008) were subcloned into the pEGFP-N1 vector (Takara Bio Inc.) and a 3× FLAG (DYKDDDDK)-N1 vector (modified from pEGFP-N1 vector) using the NheI and SmaI sites or NheI and HindIII sites, respectively. Mouse Kif1bβ cDNA was mutated using the QuikChange II XL kit (200522; Agilent Technologies) respectively with the following primer sets: 5′-CCAGCGGGATCCTTCCAGAGTGTGCAGACATCT-3′ (sense) and 5′-AGATGTCTGCACACTCTGGAAGGATCCCGCTGG-3′ (antisense) for introducing a Y1087C mutation, and 5′-CTTTGCCTATGGGCTGACTGGTGCTGGGA-3′ (sense) and 5′-TCCCAGCACCAGTCAGCCCATAGGCAAAG-3′ (antisense) for a Q98L mutation. For the GST-pulldown assay, mouse Kif1bβ 885–1,410 aa cDNA with or without the Y1087C mutation was subcloned into the pGEX-6P-3 vector (GE Healthcare) using the EcoRI and NotI sites. The expression of these vectors was verified by IB using 293A cell lysates that were transfected with a Lipofectamine LTX reagent (Thermo Fischer Scientific) according to the manufacturer’s protocols.
For knockdown experiments, RNA polymerase II–mediated RNAi expression vector plasmids were constructed using the BLOCK-iT Pol II miR RNAi Expression Vector kit (Thermo Fisher Scientific) according to the manufacturer’s protocols. Target sequences were designed using software from the manufacturer’s website (http://rnaidesigner.ThermoFisherScientific.com/rnaiexpress/rnaidesign.jsp). The following sequences were inserted: 5′-TGCTGACAGTAAGGCTGCCGGTGGTTTTGGCCACTGACTGACCACCGGCACTTACTGTAAT-3′ (KIF1Bα-miRNA) and 5′-TGCTGTATAGATGAAGACGTAAGGGCGTTTTGGCCACTGACTGACGCCCTTACCTTCATCTATA-3′ (KIF1Bβ-miRNA), in which the underlined nucleotides indicate the antisense target sequences. The TurboRFP cDNA (Evrogen) was inserted before the 5′ miR-flanking region as a marker of transfection. The specific knockdown capacities were verified using IB. The target and TurboRFP coding sequences were subcloned into the pCAGEN vector (a kind gift from Y. Gotoh, The University of Tokyo, Tokyo, Japan) for in vitro electroporation.
The following antibodies were purchased from commercial sources: anti-IGF1Rα mouse monoclonal antibody (RRID: AB_10650003; sc-271606; Santa Cruz Biotechnology) diluted 1:500 for IB or 1:100 for immunofluorescence (IF); anti-IGF1Rβ rabbit polyclonal antibody (RRID: AB_2122378; 3027; Cell Signaling Technology) diluted 1:1,000 for IB; an anti–β-tubulin III mouse monoclonal antibody (RRID: AB_532291; T5076; Sigma-Aldrich) diluted 1:10,000 for IB or 1:500 for IF; anti–α-tubulin mouse monoclonal antibody DM1A (RRID: AB_477593; T9026; Sigma-Aldrich) diluted 1:1,000 for IB; anti-GFP rabbit polyclonal antibody (RRID: AB_221569; A11122; Thermo Fisher Scientific) diluted 1:1,000 for IB or 2 µg/ml for IP; anti-DENN/MADD rabbit monoclonal antibody (RRID: AB_2650580; ab134117; Abcam) diluted 1:1,000 for IB or 1:100 for IF; antisynaptophysin mouse monoclonal antibody (RRID: AB_94947; MAB368; EMD Millipore) diluted 1:500 for IB; anti–DDDDK-tag mouse monoclonal antibody (RRID: AB_11123930; M185-3L; MBL) diluted 1:1,000 for IB; anti-Akt rabbit polyclonal antibody (RRID: AB_329827; 9272; Cell Signaling Technology) diluted 1:1,000 for IF; anti–phospho-Akt (Thr308; D25E6) rabbit monoclonal antibody (RRID: AB_2629447; 13038; Cell Signaling Technology) diluted 1:500 for IF; anti-pERK (RRID: AB_331646; 9101; Cell Signaling Technology) diluted 1:500 for IF; anti–β-actin (RRID: AB_476744; Sigma-Aldrich) diluted 1:10,000 for IB; normal rabbit IgG (catalog 55944; lot 07285; MP Cappel); Alexa fluor–labeled IgGs (Thermo Fisher Scientific) diluted 1:200–500 for IF; and HRP-labeled IgGs (GE Healthcare) diluted 1:1,000–3,000 for IB.
An anti-KIF1Bβ rabbit polyclonal antibody has previously been described (RRID: AB_2571746; Zhao et al., 2001) and was diluted 1:500 for IB. An anti-KIF1Bα rabbit polyclonal antibody was raised against the synthetic peptide NQQPPPQLRWRSNSLNNGQPKTTRC (1,037–1,061 aa; RRID:AB_2732865) and was diluted 1:500 for IB.
Mouse brain histology was performed as previously described (Zhao et al., 2001). Briefly, the brains of mouse embryos at 18.5 dpc were fixed with FEA (5% neutral buffered formalin, 5% glacial acetic acid, and 90% of 80% ethanol [vol/vol]) for 3 d. This process was followed by dehydration with ethanol, clearance with xylene, embedding in Paraplast (Sigma-Aldrich), and sectioning with a Microm HM 355 microtome (speed = 15 mm/s, CONT V = 15, thickness = 7–10 µm, temperature = 42°C, and water flow = ∼4). The sections were deparaffinized by xylene, rehydrated, and then stained using Mayer’s hematoxylin for 10 min to discern the nuclei. The sections were washed with deionized water, stained with 0.3% eosin solution (water-soluble eosin) for 5 min, dehydrated, processed with xylene, and mounted. The sections were observed using a DM3000 upright microscope equipped with 1.6×/0.05 and 10×/0.30 HCX Plan S-Apochromat objectives (Leica Microsystems). Leica Application Suite (version 3.4.1) software was used for imaging.
Primary culture of neurons
Hippocampal neurons were collected, dissociated, and cultured as previously described (Niwa et al., 2008). Briefly, the hippocampi were dissected from the brains of 16.5–17.5 dpc mouse embryos, digested with 0.25% trypsin for 15 min at 37°C, and plated in a 35-mm dish with a round hole (D11130H; Matsunami), LabTek chambered coverglass (Thermo Fisher Scientific), and a combined device of cover glass (633153; Carolina) and microfluidic chambers (Xona Microfluidics; described below in detail), which were precoated with polyethylenimine (Sigma-Aldrich) and poly-L-lysine (Sigma-Aldrich). The neurons were cultured in MEM (Gibco) containing 33.3 mM glucose, 1 mM sodium pyruvate, 2 mM GlutaMAX-I supplement (Thermo Fisher Scientific), and 10% horse serum (Thermo Fisher Scientific) for 3–4 h in a humid atmosphere with 5% CO2 at 37°C. The medium was changed to a medium with the same ingredients but with B27 supplement (Thermo Fisher Scientific) instead of horse serum. To measure neuronal outgrowth with surface IF microscopy, neurons were plated at 8.6 × 104 cells/cm2 and assayed at DIV2–3 to circumvent apoptosis (Niwa et al., 2008). To measure IGF-I signaling, neurons were plated at 2.6–4.3 × 104 cells/cm2 and assayed at DIV4. Mouse cortical neuron culture was performed as previously described (Ichinose et al., 2015).
Microfluidic chamber culture
Microfluidic chamber culture was performed basically as previously described (Zhou et al., 2012). The coverslips (24 × 50 mm; thickness 0.13–0.17 mm; 633153; Carolina) were washed by sonication for 30 min, rinsed with 70% ethanol and double-distilled water (three times), and dried in a 50°C oven overnight. The samples were further coated with poly-L-lysine overnight, which was followed by a double-distilled water wash for 1 h three times, and the samples were finally dried for ∼15 min. During washing, the microfluidic chambers were sterilized with 70% ethanol and dried for >1 h. Then, the dried cover glasses and microfluidic chambers were combined and preincubated with MEM containing 33.3 mM glucose, 1 mM sodium pyruvate, 2 mM GlutaMAX-I supplement, and 10% horse serum. Dissociated hippocampal neurons were added to the left main channels of the chamber as drops of 10 µl for two to three times at a concentration of ∼6 × 104 cells/ml. The medium was changed to one containing B27 supplement 30 min after the cells were loaded. The medium was then changed every 2 d.
The dissociated cultured hippocampal neurons were transfected using an improved calcium phosphate protocol at DIV1–6 (Jiang and Chen, 2006) or electroporation before plating using a Neon transfection system (Thermo Fisher Scientific) with the indicated constructs following to the manufacturer’s protocol. Briefly, 1 µg DNA was mixed with 4–8 × 104 neurons in 10 µl buffer and inserted in a 10 µl Neon Tip. Then, the electroporation was performed with the following conditions: pulse voltage = 1,400 V, pulse width = 20 ms, and pulse number = 1.
Yeast two-hybrid assays
Yeast two-hybrid assays were performed using the MatchMaker version 3 kit (Takara Bio Inc.) as previously described (Zhou et al., 2009). Five fragments of mouse Kif1bβ cDNA corresponding with aa 764–1,603, 885–1,410, 1,101–1,603, 1,411–1,603, 885–1,100, and 1,655–1,754 or mouse Kif1a 836–1,346-aa cDNA were ligated to the bait vector pGBKT7 (Takara Bio Inc.). The ICD of mouse Igf1r (961–1,373 aa) was ligated with the prey vector pGADT7 (Takara Bio Inc.). Yeast cells were cotransformed with each pair of bait and prey vectors, and the interaction between the fragments was assessed using α-galactosidase staining (Takara Bio Inc.) according to the Yeast Protocol Handbook (Takara Bio Inc.).
Vesicle IP and flotation assays
Vesicle IP and flotation assays were performed as previously described (Zhao et al., 2001; Tanaka et al., 2016). WT and Kif1bβGFP/GFP adult mouse brains were homogenized with ∼5 ml Hepes-sucrose buffer (10 mM Hepes, pH 7.4, 320 mM sucrose, 5 mM MgSO4, 1 mM EGTA, and protease inhibitors [cOmplete mini EDTA-free inhibitor; Roche]) and cleared by centrifugation twice at 1,000 g for 10 min at 4°C. For IP, the supernatant (S1) was mixed with 50 µl magnetic beads (μMACS Protein A; 130-042-601; Miltenyi Biotec) and 2 µg anti-GFP antibody for 2 h at 4°C. The beads were washed, eluted, and sampled for IB. For the flotation assay, the supernatant was diluted in 60% Nycodenz at a volume ratio of 1:5 and subjected to step-gradient ultracentrifugation with Nycodenz (0, 10, 20, 30, 40, 50, and 60%; Progen Biotechnik) in OptiSeal tubes (11.2 ml; 362181; Beckman Coulter) using an Optima XL-100K Ultracentrifuge with an NVT 65 rotor (Beckman Coulter) at 65,000 rpm for 2.5 h at 4°C with both acceleration and deceleration in the slowest mode of 9. The effluent fractions were collected by piercing the bottom of the tube with a 22G needle (NN-2238R; Terumo) and placing in 1.5-ml tubes at 500 µl/tube, and the fractions were subjected to IB.
The cortical neurons of 17.5-dpc mouse brains were plated on 10-cm dishes at a density of 8.6 × 104 cells/cm2 basically as previously described (Ichinose et al., 2015). The samples were subjected to a surface biotinylation assay at DIV7 as previously described (Tanaka et al., 2016) using the Pierce Cell Surface Protein Isolation kit (89881; Thermo Fisher Scientific) according to the manufacturer’s protocols. The same amounts of protein in Kif1b+/+ and Kif1b−/− lysates were subjected to the assay. The membrane fraction was loaded at the same ratio as the total protein fraction, which was normalized according to the β-actin level.
A GST-pulldown assay was performed basically as previously described (Zhao et al., 2001; Kanai et al., 2004). Escherichia coli strain BL21 was transformed with the respective GST-fused expression vectors and induced for protein expression with 0.5 mM IPTG at 16°C for 24 h when the OD600 reached 0.4–0.6. The bacteria were pelleted and subjected to a French Press after resuspension in buffer containing 50 mM Tris, pH 8.0, 0.5 M NaCl, 1% Triton X-100, and protease inhibitors (cOmplete mini EDTA-free inhibitor; Roche). The lysates were cleared by ultracentrifugation using an Optima XL-100K Ultracentrifuge with a 70Ti rotor (Beckman Coulter) at 50,000 rpm at 2°C for 0.5 h. The supernatant was divided into 1.5-ml tubes, snap frozen in liquid N2, and then kept in a −80°C deep freezer for future use. Saturated amounts of lysates were loaded onto Glutathione Sepharose beads (17-0756-05; GE Healthcare), washed with WIBA (20 mM Tris, pH 8.5, 1 M NaCl, 1 mM Mg acetate, and 1% Triton X-100), and then washed with WIBB (20 mM Tris, pH 8.5, 1 mM Mg acetate, and 1% Triton X-100). Adult mouse brains were homogenized in buffer containing 20 mM Hepes, pH 7.4, 150 mM NaCl, 1% Triton X-100, 1 mM EGTA, and 1 mM Mg acetate. The S2 fraction was collected, precleared, and rotated with the beads at 4°C for 2 h. The beads were washed with homogenization buffer four times and subjected to IB analysis.
Pulldown of heterologously expressed KIF1Bβ885–1,410 by purified IGF1RβICD–3×FLAG
GST-tagged KIF1Bβ885–1,410 and GST alone were expressed in E. coli BL21 (DE3) and purified by affinity chromatography using Glutathione Sepharose 4B beads (GE Healthcare) followed by gel filtration through a Superdex 200 (GE Healthcare) size exclusion chromatography column. IGF1RβICD–3×FLAG was expressed in HEK 293 cells and extracted with lysis buffer (50 mM Tris, 150 mM NaCl, 0.1% Triton X-100, 0.05% CHAPS, and cOmplete, pH 8.0). An anti-FLAG M2 Affinity Gel (Merck) was incubated with the cell extracts for 1 h followed by three washes with the lysis buffer. Expression and purification of IGF1RβICD–3×FLAG was verified by IB. Purified GST or GST–KIF1Bβ885–1,410 was incubated with IGF1RβICD–3×FLAG-coated beads in TBS (50 mM Tris and 150 mM NaCl, pH 8.0) for 1 h. After washing the beads with the TBS three times, proteins were eluted with 200 µg/ml 3×FLAG peptide, subjected to 15% SDS-PAGE, and stained with Coomassie Brilliant Blue.
Human genome analyses
Two new independent pedigrees of CMT2A were diagnosed at the Neuromuscular Clinic of the Penn State Hershey Medical Center and Hamburg Center. Upon written informed consent and ethics committee approval at Pennsylvania State University and The University of Tokyo, the patient DNA samples were subjected to exome sequencing by Proprietary Next-Generation Sequencing technologies using the Illumina HiSeq 1500 platform. The Hereditary Neuropathy NextGen DNA Sequencing Panel included the following 33 genes (MIM numbers): AARS (601065), ATL1 (606439), DNM2 (602378), DNMT1 (126375), DYNC1H1 (600112), EGR2 (129010), FGD4 (611104), GARS (600287), GDAP1 (606598), GJB1 (304040), GLA (300644), HSPB1 (602195), HSPB8 (608014), KIF1B (605995), LITAF (603795), LMNA (150330), LRSAM1 (610933), MED25 (610197), MFN2 (608507), MPZ (159440), MTMR2 (603557), NDRG1 (605262), NEFL (162280), PMP22 (601097), PRX (605725), RAB7A (602298), SBF2 (607697), SCN9A (603415), SH3TC2 (608206), SPTLC2 (605713), TRPV4 (605427), TTR (176300), and YARS (603623).
Immunocytochemistry was performed as previously described (Tanaka et al., 2016). Mouse hippocampal neurons at DIV2–4 were fixed in 4% PFA/PBS at 37°C for 10 min and directly blocked (for surface anti-IGF1Rα staining), or they were permeabilized first with 0.1% Triton X-100 or 1% saponin (for anti-IGF1Rα staining) in PBS, blocked using 1% normal goat serum/PBS, and incubated with primary antibodies overnight at 4°C in the blocking buffer (in the case of saponin, the detergent was added throughout the procedure). This was followed by PBS washes for 5 min each, thrice. They were then incubated with Alexa Fluor–labeled secondary antibodies (Thermo Fisher Scientific) diluted at 1:500 for 1 h at room temperature. They were washed three times with PBS for 5 min each and observed with confocal laser-scanning microscopy (LSM510, LSM5-Duo, LSM710, or LSM780 with Airyscan; ZEISS) equipped with the objectives (40×/1.4 Plan Apochromat oil immersion, 40×/1.3 Plan Apochromat oil immersion, 20×/0.8 Plan Apochromat, or 40×/1.2 C-Apochromat) or SR-SIM (model ELYRA S.1; ZEISS) equipped with an α Plan Apochromat objective (100×/1.46 oil immersion) at room temperature. The data acquisition was conducted by using Zen software (ZEISS). Fluorescent quantification was conducted using either ImageJ (National Institutes of Health) or MetaMorph (Molecular Devices) software.
Especially for pAkt IF staining, neurons were plated at a density of 4.3 × 104 cells/cm2. At DIV3, they were starved for 2 h without serum or supplement and then stimulated by 5 nM IGF for 5 min. The cells were then immediately fixed in 4% PFA/PBS containing a phosphatase inhibitor cocktail (PhosSTOP; Roche) at 37°C for 10 min, stained after permeabilization using 0.1% Triton X-100 in PBS, and observed as described above.
For TUNEL staining, dissociated hippocampal neurons were fixed at DIV3 and subjected to TUNEL assays using the In Situ Cell Death Detection kit, Fluorescein (11684795910; Roche), following the manufacturer’s protocols with counterstaining against βIII-tubulin.
For rescue experiments of membrane IGF1R staining, hippocampal neurons were plated at a density of 2.6 × 104 cells/cm2 on 35-mm glass-bottom dishes (14-mm diameter hole; No.1S 0.16–0.19 mm; D11130H; Matsunami). The neurons were transfected with the respective rescue plasmids at DIV1 and fixed at DIV4 followed by anti-IGF1Rα immunostaining without permeabilization. The samples were imaged after postfixation.
The primary cultured hippocampal neurons of Kif1bβ-EGFP–knock-in mice were observed in the complete culture medium at room temperature on a ZEISS ELYRA.P1 total internal reflection fluorescence microscope with an α Plan Apochromat objective (100×/1.46 oil immersion). The SP-IGF1Rβ-RFP expression vector was cotransfected with the KIF1Bβ-EGFP expression vector into DIV6-dissociated cultured hippocampal neurons using the calcium phosphate method, and live imaging was similarly conducted at DIV7. The GFP and RFP signals were recorded in a humid 5% CO2 atmosphere at 37°C on a spinning-disk confocal unit with an Andor iXon electron-multiplying charge-coupled device camera on an inverted ZEISS Axiophot microscope equipped with 100×/1.46 Plan Apochromat oil immersion objective lens as previously described (Tanaka et al., 2016) or on an inverted ZEISS LSM780 confocal laser-scanning microscope with a Plan Apochromat oil-immersion objective (40×/1.3) sequentially with an exposure time of 500 ms. The data were collected with the Andor iQ2 or ZEISS Zen software and aligned with the ImageJ and MetaMorph software. Because of the time delay in sequential recording, RFP images of the comigration vesicles were continuously followed by the GFP images.
For organelle colocalization assay in Fig. 5, the immunostained samples were subjected to a SR-SIM (ELYRA PS.1) equipped with an oil-immersed α Plan Apochromat lens (100×/1.46) using Zen software and analyzed using ImageJ and MetaMorph software.
Statistical analysis was performed in Prism 6 (GraphPad Software), Excel (Microsoft), and R software. Statistical tests, number of samples, and experiments are indicated in the figure legends. No statistical method was used to predetermine the sample size. For t tests, the normal distribution was not assumed according to Welch’s method. Before the ANOVA tests, the normal distribution was tested using Kolmogorov–Smirnov test.
Online supplemental material
In Fig. S1, histological data and in vitro data are presented, suggesting that KIF1B deficiency or the KIF1Bβ Y1087C mutation impairs axon growth. In Fig. S2, the functional difference between KIF1Bβ and KIF1A, generation of KIF1bβGFP/GFP mice, and quantification of IGF1R transport on KIF1B deficiency are described. In Fig. S3, the effect of KIF1B deficiency on surface IGF1Rα levels is described. In Fig. S4, the effect of KIF1B deficiency or KIF1Bβ mutation on IGF-I–mediated ERK signaling is described. In Fig. S5, unchanged total Akt levels in RNAi experiments are shown. In Video 1, live imaging of a KIF1Bβ-EGFP–knock-in neuron is shown. In Video 2, comigration of KIF1Bβ and IGF1R is shown.
We thank Yukiko Gotoh (The University of Tokyo, Tokyo, Japan) for providing the pCAGEN vector and valuable suggestions on receptor tyrosine kinase biology; Kenji Sakimura and his colleagues (Niigata University, Niigata, Japan) for providing RENKA embryonic stem cells and indispensable technical supports; Akio Sekigawa and Kayoko Suenaga (ZEISS) for their help with SR-SIM and Airyscan microscopy; and Ruyun Zhou, Atsushi Odagaki, Fumiyoshi Ishidate, Hiromi Sato, Nobuhisa Onouchi, Takeshi Akamatsu, Haruyo Fukuda, and all the members of the N. Hirokawa laboratory for their technical help and valuable discussions.
This study was supported by the Japan Society for the Promotion of Science KAKENHI grants JP23000013 and JP16H06372 to N. Hirokawa. F. Xu was supported by a Honjo International Scholarship Foundation scholarship from Itoen Company and served as a research assistant at The University of Tokyo during the four years of PhD candidate period.
The authors declare no competing financial interests.
Author contributions: N. Hirokawa conceived of and directed the project. N. Hirokawa and Y. Tanaka conceptualized and supervised the project. F. Xu and Y. Tanaka generated the mice. F. Xu, H. Takahashi, Y. Tanaka, S. Niwa, S. Ichinose, and N. Hirokawa designed and conducted the experiments. M.P. Wicklund contributed the clinical data. All authors discussed the data and wrote the paper.
M.P. Wicklund’s present address is Department of Neurology, University of Colorado Denver, Aurora, CO.