Clathrin-mediated endocytosis (CME) is a critical cellular process that regulates nutrient uptake, membrane composition, and signaling. Although replicative aging affects many cellular functions, its impact on CME remains largely unknown. We show that in budding yeast, older cells have slower assembly of early and coat CME modules, resulting in longer endocytic turnover and reduced Mup1 internalization. This change in CME dynamics is mother cell–specific, and not observed in daughters. Our data also show that perturbing vacuolar pH, a key driver of aging phenotypes, in young cells mimics aging-like CME dynamics, while maintaining an acidic vacuolar pH in aging cells preserves CME dynamics typical of young cells. We demonstrate that the vacuolar pH effect on CME is regulated through TORC1 via the effector kinase Npr1. Finally, we show that rescuing CME in aging cells improves mitochondrial health. These findings reveal that age-associated changes in cellular and vacuolar pH impair CME, and suggest CME as a potential driver of early cellular aging.
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3 November 2025
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Article|
September 24 2025
Vacuolar pH regulates clathrin-mediated endocytosis through TORC1 signaling during replicative aging
Kenneth Gabriel Antenor
,
Kenneth Gabriel Antenor
(Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Validation, Visualization, Writing - original draft, Writing - review & editing)
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada2Graduate Program in Molecular Science, Toronto Metropolitan University, Toronto, ON, Canada
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Jaime Lee-Dadswell
,
Jaime Lee-Dadswell
(Data curation, Formal analysis)
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada
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Natasha Salahshour
,
Natasha Salahshour
(Investigation, Methodology)
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada2Graduate Program in Molecular Science, Toronto Metropolitan University, Toronto, ON, Canada
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Nina Grishchenko
,
Nina Grishchenko
(Data curation, Formal analysis, Software, Visualization)
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada
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Shaimaa Swaleh
,
Shaimaa Swaleh
(Investigation, Validation)
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada
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Gurjyot Makhija
,
Gurjyot Makhija
(Data curation, Formal analysis)
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada
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Allie Spangaro
,
Allie Spangaro
(Investigation)
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada2Graduate Program in Molecular Science, Toronto Metropolitan University, Toronto, ON, Canada
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Mojca Mattiazzi Usaj
(Conceptualization, Data curation, Funding acquisition, Methodology, Project administration, Resources, Supervision, Validation, Writing - original draft, Writing - review & editing)
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada2Graduate Program in Molecular Science, Toronto Metropolitan University, Toronto, ON, Canada
Correspondence to Mojca Mattiazzi Usaj: [email protected]
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Kenneth Gabriel Antenor
https://orcid.org/0009-0004-0201-9319
Conceptualization, Data curation, Formal analysis, Investigation, Methodology, Project administration, Validation, Visualization, Writing - original draft, Writing - review & editing
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada2Graduate Program in Molecular Science, Toronto Metropolitan University, Toronto, ON, Canada
Jaime Lee-Dadswell
https://orcid.org/0009-0007-0383-654X
Data curation, Formal analysis
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada
Natasha Salahshour
https://orcid.org/0009-0009-8312-8539
Investigation, Methodology
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada2Graduate Program in Molecular Science, Toronto Metropolitan University, Toronto, ON, Canada
Nina Grishchenko
https://orcid.org/0009-0007-5823-9531
Data curation, Formal analysis, Software, Visualization
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada
Shaimaa Swaleh
https://orcid.org/0009-0001-9503-7396
Investigation, Validation
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada
Gurjyot Makhija
https://orcid.org/0009-0004-0274-3622
Data curation, Formal analysis
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada
Allie Spangaro
https://orcid.org/0009-0000-8356-0668
Investigation
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada2Graduate Program in Molecular Science, Toronto Metropolitan University, Toronto, ON, Canada
Mojca Mattiazzi Usaj
https://orcid.org/0000-0002-7389-8478
Conceptualization, Data curation, Funding acquisition, Methodology, Project administration, Resources, Supervision, Validation, Writing - original draft, Writing - review & editing
1Department of Chemistry and Biology, Faculty of Science,
Toronto Metropolitan University
, Toronto, ON, Canada2Graduate Program in Molecular Science, Toronto Metropolitan University, Toronto, ON, Canada
Correspondence to Mojca Mattiazzi Usaj: [email protected]
Disclosures: The authors declare no competing interests exist.
Received:
December 09 2024
Revision Received:
June 27 2025
Accepted:
August 14 2025
Online ISSN: 1540-8140
Print ISSN: 0021-9525
Funding
Funder(s):
Toronto Metropolitan University
Funder(s):
Natural Sciences and Engineering Research Council of Canada
- Award Id(s): 03741-2021
© 2025 Antenor et al.
2025
Antenor et al.
This article is distributed under the terms as described at https://rupress.org/pages/terms102024/.
J Cell Biol (2025) 224 (11): e202412064.
Article history
Received:
December 09 2024
Revision Received:
June 27 2025
Accepted:
August 14 2025
Connected Content
Citation
Kenneth Gabriel Antenor, Jaime Lee-Dadswell, Natasha Salahshour, Nina Grishchenko, Shaimaa Swaleh, Gurjyot Makhija, Allie Spangaro, Mojca Mattiazzi Usaj; Vacuolar pH regulates clathrin-mediated endocytosis through TORC1 signaling during replicative aging. J Cell Biol 3 November 2025; 224 (11): e202412064. doi: https://doi.org/10.1083/jcb.202412064
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