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Journal Articles

Functional targeting of ILC2s and ILC3s reveals selective roles in intestinal fibrosis and homeostasis

Ahmed Kabil, Natalia Nayyar, Chengxi Xu, Julyanne Brassard, Lesley A. Hill, Samuel B. Shin, Sameeksha Chopra, Bernard Lo, Yicong Li, Mya Bal, Marine Theret, Fabio M.V. Rossi, T. Michael Underhill, Michael R. Hughes, Kelly M. McNagny
Journal: Journal of Experimental Medicine
J Exp Med (2025) 222 (7): e20241671.
https://doi.org/10.1084/jem.20241671
Published: 28 May 2025
View article titled, Functional targeting of ILC2s and ILC3s reveals selective roles in intestinal fibrosis and homeostasis
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Includes: Supplementary data
Journal Articles

Development of Varicella Zoster Encephalitis Following Live Vaccination in a Patient with Ataxia Telangiectasia

Luke Legakis, Junghee Shin
Journal: Journal of Human Immunity
Series: CIS Meeting Abstracts 2025
J Hum Immun (2025) 1 (CIS2025): CIS2025abstract.190.
https://doi.org/10.70962/CIS2025abstract.190
Published: 25 April 2025
View article titled, Development of Varicella Zoster Encephalitis Following Live Vaccination in a Patient with Ataxia Telangiectasia
Journal Articles

Sorting nexin 10 regulates lysosomal ionic homeostasis via ClC-7 by controlling PI(3,5)P2

Jing Ze Wu, Joshua G. Pemberton, Shin Morioka, Junko Sasaki, Priya Bablani, Takehiko Sasaki, Tamas Balla, Sergio Grinstein, Spencer A. Freeman
Journal: Journal of Cell Biology
J Cell Biol (2025) 224 (6): e202408174.
https://doi.org/10.1083/jcb.202408174
Published: 26 March 2025
View article titled, Sorting nexin 10 regulates lysosomal ionic homeostasis via ClC-7 by controlling PI(3,5)P2
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Includes: Supplementary data
Journal Articles

TanGIBLE: A selective probe for evaluating hydrophobicity-exposed defective proteins in live cells

Yasuyuki Iwasa, Sohtaroh Miyata, Takuya Tomita, Naoto Yokota, Maho Miyauchi, Ruka Mori, Shin Matsushita, Rigel Suzuki, Yasushi Saeki, Hiroyuki Kawahara
Journal: Journal of Cell Biology
J Cell Biol (2025) 224 (3): e202109010.
https://doi.org/10.1083/jcb.202109010
Published: 15 January 2025
View article titled, TanGIBLE: A selective probe for evaluating hydrophobicity-exposed defective proteins in live cells
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Includes: Supplementary data
Journal Articles

VPS13B is localized at the interface between Golgi cisternae and is a functional partner of FAM177A1

Berrak Ugur, Florian Schueder, Jimann Shin, Michael G. Hanna, Yumei Wu, Marianna Leonzino, Maohan Su, Anthony R. McAdow, Catherine Wilson, John Postlethwait, Lilianna Solnica-Krezel, Joerg Bewersdorf, Pietro De Camilli
Journal: Journal of Cell Biology
J Cell Biol (2024) 223 (12): e202311189.
https://doi.org/10.1083/jcb.202311189
Published: 27 September 2024
View article titled, VPS13B is localized at the interface between Golgi cisternae and is a functional partner of FAM177A1
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Includes: Supplementary data
Journal Articles

Transcriptional network dynamics in early T cell development

In Special Collection:
Autoimmunity 2024 , Immunity Review Series
Boyoung Shin, Samantha J. Chang, Brendan W. MacNabb, Ellen V. Rothenberg
Journal: Journal of Experimental Medicine
Series: Thymus and T Cell Development Focus
J Exp Med (2024) 221 (10): e20230893.
https://doi.org/10.1084/jem.20230893
Published: 21 August 2024
View article titled, Transcriptional network dynamics in early T cell development
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Journal Articles

The intercentriolar fibers function as docking sites of centriolar satellites for cilia assembly

In Special Collection:
Centrosomes and Cilia 2024
Sungjin Ryu, Donghee Ko, Byungho Shin, Kunsoo Rhee
Journal: Journal of Cell Biology
J Cell Biol (2024) 223 (4): e202105065.
https://doi.org/10.1083/jcb.202105065
Published: 28 February 2024
View article titled, The intercentriolar fibers function as docking sites of centriolar satellites for cilia assembly
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Includes: Supplementary data
Journal Articles

A TNF-IL-1 circuit controls Yersinia within intestinal pyogranulomas

In Special Collection:
Innate Immune Signaling: From Host Defense to Disease Pathogenesis , JEM Mucosal Immunology 2024
Rina Matsuda, Daniel Sorobetea, Jenna Zhang, Stefan T. Peterson, James P. Grayczyk, Winslow Yost, Nicolai Apenes, Maria E. Kovalik, Beatrice Herrmann, Rosemary J. O’Neill, Andrea C. Bohrer, Matthew Lanza, Charles-Antoine Assenmacher, Katrin D. Mayer-Barber, Sunny Shin, Igor E. Brodsky
Journal: Journal of Experimental Medicine
J Exp Med (2024) 221 (3): e20230679.
https://doi.org/10.1084/jem.20230679
Published: 16 February 2024
View article titled, A TNF-IL-1 circuit controls Yersinia within intestinal pyogranulomas
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Journal Articles

TLR7/8 stress response drives histiocytosis in SLC29A3 disorders

Takuma Shibata, Ryota Sato, Masato Taoka, Shin-Ichiroh Saitoh, Mayumi Komine, Kiyoshi Yamaguchi, Susumu Goyama, Yuji Motoi, Jiro Kitaura, Kumi Izawa, Yoshio Yamauchi, Yumiko Tsukamoto, Takeshi Ichinohe, Etsuko Fujita, Ryosuke Hiranuma, Ryutaro Fukui, Yoichi Furukawa, Toshio Kitamura, Toshiyuki Takai, Arinobu Tojo, Mamitaro Ohtsuki, Umeharu Ohto, Toshiyuki Shimizu, Manabu Ozawa, Nobuaki Yoshida, Toshiaki Isobe, Eicke Latz, Kojiro Mukai, Tomohiko Taguchi, Hiroaki Hemmi, Shizuo Akira, Kensuke Miyake
Journal: Journal of Experimental Medicine
J Exp Med (2023) 220 (9): e20230054.
https://doi.org/10.1084/jem.20230054
Published: 18 July 2023
View article titled, TLR7/8 stress response drives histiocytosis in SLC29A3 disorders
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Journal Articles

Dendrite remodeling according to GARP

Grace Ji-eun Shin, Wesley B. Grueber
Journal: Journal of Cell Biology
J Cell Biol (2022) 222 (1): e202211072.
https://doi.org/10.1083/jcb.202211072
Published: 22 December 2022
View article titled, Dendrite remodeling according to GARP
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Journal Articles

Lymph node fibroblastic reticular cells regulate differentiation and function of CD4 T cells via CD25

In Special Collection:
Lymphatic Vessels in Health and Disease 2022
Dongeon Kim, Mingyo Kim, Tae Woo Kim, Yong-ho Choe, Hae Sook Noh, Hyun Min Jeon, HyunSeok Kim, Youngeun Lee, Gayeong Hur, Kyung-Mi Lee, Kihyuk Shin, Sang-il Lee, Seung-Hyo Lee
Journal: Journal of Experimental Medicine
J Exp Med (2022) 219 (5): e20200795.
https://doi.org/10.1084/jem.20200795
Published: 22 March 2022
View article titled, Lymph node fibroblastic reticular cells regulate differentiation and function of CD4 T cells via CD25
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Includes: Supplementary data
Journal Articles

NFAT-dependent and -independent exhaustion circuits program maternal CD8 T cell hypofunction in pregnancy

In Special Collection:
JEM Immunology Collection 2022
Emma L. Lewis, Rong Xu, Jean-Christophe Beltra, Shin Foong Ngiow, Jordana Cohen, Rahul Telange, Alexander Crane, Deirdre Sawinski, E. John Wherry, Paige M. Porrett
Journal: Journal of Experimental Medicine
J Exp Med (2021) 219 (1): e20201599.
https://doi.org/10.1084/jem.20201599
Published: 09 December 2021
View article titled, NFAT-dependent and -independent exhaustion circuits program maternal CD8 T cell hypofunction in pregnancy
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Includes: Supplementary data
Journal Articles

Dnmt3a-mutated clonal hematopoiesis promotes osteoporosis

In Special Collection:
2021: The Year in Experimental Medicine , Stem Cell Collection 2022
Peter Geon Kim, Abhishek Niroula, Veronica Shkolnik, Marie McConkey, Amy E. Lin, Mikołaj Słabicki, John P. Kemp, Alexander Bick, Christopher J. Gibson, Gabriel Griffin, Aswin Sekar, Daniel J. Brooks, Waihay J. Wong, Drew N. Cohen, Md Mesbah Uddin, Wesley J. Shin, James Pirruccello, Jonathan M. Tsai, Mridul Agrawal, Douglas P. Kiel, Mary L. Bouxsein, J. Brent Richards, David M. Evans, Marc N. Wein, Julia F. Charles, Siddhartha Jaiswal, Pradeep Natarajan, Benjamin L. Ebert
Journal: Journal of Experimental Medicine
J Exp Med (2021) 218 (12): e20211872.
https://doi.org/10.1084/jem.20211872
Published: 26 October 2021
View article titled, Dnmt3a-mutated clonal hematopoiesis promotes osteoporosis
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Includes: Supplementary data
Journal Articles

SNAP23 deficiency causes severe brain dysplasia through the loss of radial glial cell polarity

In Special Collection:
Cellular Neurobiology 2021
Masataka Kunii, Yuria Noguchi, Shin-ichiro Yoshimura, Satoshi Kanda, Tomohiko Iwano, Erda Avriyanti, Nur Atik, Takashi Sato, Ken Sato, Masaharu Ogawa, Akihiro Harada
Journal: Journal of Cell Biology
J Cell Biol (2020) 220 (1): e201910080.
https://doi.org/10.1083/jcb.201910080
Published: 17 December 2020
View article titled, SNAP23 deficiency causes severe brain dysplasia through the loss of radial glial cell polarity
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Includes: Supplementary data
Journal Articles

Nuclear lipid droplets form in the inner nuclear membrane in a seipin-independent manner

Kamil Sołtysik, Yuki Ohsaki, Tsuyako Tatematsu, Jinglei Cheng, Asami Maeda, Shin-ya Morita, Toyoshi Fujimoto
Journal: Journal of Cell Biology
J Cell Biol (2020) 220 (1): e202005026.
https://doi.org/10.1083/jcb.202005026
Published: 14 December 2020
View article titled, Nuclear lipid droplets form in the inner nuclear membrane in a seipin-independent manner
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Includes: Supplementary data
Journal Articles

Notch2 complements Notch1 to mediate inductive signaling that initiates early T cell development

In Special Collection:
Immune Cell Biology 2021 , Stem Cells and Development 2021
Maile Romero-Wolf, Boyoung Shin, Wen Zhou, Maria Koizumi, Ellen V. Rothenberg, Hiroyuki Hosokawa
Journal: Journal of Cell Biology
J Cell Biol (2020) 219 (10): e202005093.
https://doi.org/10.1083/jcb.202005093
Published: 05 August 2020
View article titled, Notch2 complements Notch1 to mediate inductive signaling that initiates early T cell development
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Includes: Supplementary data
Journal Articles

Dscam2 suppresses synaptic strength through a PI3K-dependent endosomal pathway

G. Lorenzo Odierna, Sarah K. Kerwin, Lucy E. Harris, Grace Ji-eun Shin, Nickolas A. Lavidis, Peter G. Noakes, S. Sean Millard
Journal: Journal of Cell Biology
J Cell Biol (2020) 219 (6): e201909143.
https://doi.org/10.1083/jcb.201909143
Published: 07 April 2020
View article titled, Dscam2 suppresses synaptic strength through a PI3K-dependent endosomal pathway
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Includes: Supplementary data
Journal Articles

A homozygous SFTPA1 mutation drives necroptosis of type II alveolar epithelial cells in patients with idiopathic pulmonary fibrosis

Akio Takezaki, Shin-ichi Tsukumo, Yasuhiro Setoguchi, Julie G. Ledford, Hisatsugu Goto, Kazuyoshi Hosomichi, Hisanori Uehara, Yasuhiko Nishioka, Koji Yasutomo
Journal: Journal of Experimental Medicine
J Exp Med (2019) 216 (12): 2724–2735.
https://doi.org/10.1084/jem.20182351
Published: 10 October 2019
View article titled, A homozygous SFTPA1 mutation drives necroptosis of type II alveolar epithelial cells in patients with idiopathic pulmonary fibrosis
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Includes: Supplementary data
Journal Articles

PIP4K2A as a negative regulator of PI3K in PTEN-deficient glioblastoma

Yong Jae Shin, Jason K. Sa, Yeri Lee, Donggeon Kim, Nakho Chang, Hee Jin Cho, Miseol Son, Michael Y.T. Oh, Kayoung Shin, Jin-Ku Lee, Jiwon Park, Yoon Kyung Jo, Misuk Kim, Patrick J. Paddison, Vinay Tergaonkar, Jeongwu Lee, Do-Hyun Nam
Journal: Journal of Experimental Medicine
J Exp Med (2019) 216 (5): 1120–1134.
https://doi.org/10.1084/jem.20172170
Published: 21 March 2019
View article titled, PIP4K2A as a negative regulator of PI3K in PTEN-deficient glioblastoma
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Includes: Supplementary data
Journal Articles

Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II

In Special Collection:
JCB65: Nuclear and Chromatin Biology , Nuclear Organization 2019 , RNA , The Year in Cell Biology: 2019
Ryosuke Nagashima, Kayo Hibino, S.S. Ashwin, Michael Babokhov, Shin Fujishiro, Ryosuke Imai, Tadasu Nozaki, Sachiko Tamura, Tomomi Tani, Hiroshi Kimura, Michael Shribak, Masato T. Kanemaki, Masaki Sasai, Kazuhiro Maeshima
Journal: Journal of Cell Biology
J Cell Biol (2019) 218 (5): 1511–1530.
https://doi.org/10.1083/jcb.201811090
Published: 01 March 2019
View article titled, Single nucleosome imaging reveals loose genome chromatin networks via active RNA polymerase II
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Includes: Supplementary data