Panel A shows western blots of KPC cells treated with either non-targeting cET-ASONT or cET-ASOKras, indicating the absence of phosphorylation on EPHA2Tyr588 and AKT Ser473. Panel B displays western blots of the same treatments, showing phosphorylation on JNKTyr185 and Thr221, MEK1/2 Ser217 and Ser221, and lack of phosphorylation on p38MAPK Thr180 and Tyr182. Panel C presents western blots of cET-ASONT or cET-ASOKras-treated KPC cells, showing phosphorylation on JNK Tyr185 and Thr221 and lack of phosphorylation on AKT Ser473 in both Epha2 wild-type and Epha2 knockout cells. Panel D shows western blots of EPHA2 wild-type and EPHA2 CRISPR knockout H1299 cells treated with cET-ASOKras, indicating phosphorylation on EPHA2 Ser897, p90RSK Ser380, and ERK1/2 Tyr202/204. Panel E is a heatmap showing messenger RNA expression levels of scavenger receptor family members in EPHA2 wild-type and EPHA2 siRNA-depleted H1299 cells. Panels F and G show immunostainings of PDAC patient tumour tissue, highlighting EPHA2 and SCARB1 or CD44 within tumour nodules. Panel H displays bar graphs of Scarb1 and Cd44 messenger RNA expression levels in KPC cells transduced with different single-guide RNAs. Panel I shows western blots of SCARB1 and CD44 protein expression in KPC cells. Panel J presents a bar graph of Kras messenger RNA expression in Scarb1 CRISPR knockout KPC cell lines treated with cET-ASOKras. Panel K shows western blots of the effect of Scarb1 depletion oncET-ASOKras-induced activation of ERK1/2, p90RSK, and EPHA2 phosphorylation. Panel L displays a bar graph of SCARB1 and CD44 messenger RNA expression in H1299 cells transduced with siRNA. Panel M shows a bar graph of KRAS messenger RNA expression in H1299 cells transduced with siRNA and treated with cET-ASOKras. Panel N presents western blots of the effect of SCARB1 and CD44 depletion on MAPK signalling and KRAS expression in H1299 cells.
Supplementary data related to Fig. 3. (A) Western blotting of either nontargeting cET-ASONT or cET-ASOKras–treated KPC cells, showing the absence of phosphorylation induction on EPHA2 Tyr588 and AKT Ser473. GAPDH was used as a loading control. (B) Western blotting of either nontargeting cET-ASONT or cET-ASOKras–treated KPC cells, showing the induction of phosphorylation on JNK Tyr185 and Thr221, MEK1/2 Ser217 and Ser221, as well as the lack of induction of phosphorylation on p38MAPK Thr180 and Tyr182. Vinculin was used as a loading control. (C) Western blotting in either cET-ASONT or cET-ASOKras–treated KPC cells, showing the induction of phosphorylation on JNK Tyr185 and Thr221 and the lack of induction of phosphorylation on AKT Ser473 in KPC Epha2−/− cells. Western blotting was performed on the same samples that were used for the experiment presented in Fig. 3 D. Thus, the vinculin blot used as a loading control in Fig. 3 D is also used as a sample control in this panel. (D) Western blotting showing the induction of the phosphorylation of EPHA2 Ser897, p90RSK Ser380, and ERK1/2 Tyr202/204 in cET-ASOKras–treated EPHA2+/+ and EPHA2CRISPR-KO H1299 cells. * Band corresponds to the band previously obtained by blotting for EPHA2 phospho-Ser897. Histone H3 was used as a loading control. (E) Heatmap showing levels of mRNA expression (RNA-seq normalized reads) of each member of the SR family in either EPHA2+/+ (top) or EPHA2-siRNA depleted (bottom) H1299 cells. Red text corresponds to the highest expressed genes both in KPC and H1299 cells. Outlier values are indicated in dark brown. (F) PDAC patient tumor tissue immunostaining. Top panels show the staining of EPHA2 (green) and SCARB1 (red) within the tumor nodules. Bottom panels correspond to amplification of the area contained in the white dotted line frame. (G) PDAC patient tumor tissue immunostaining. Top panels show the staining of EPHA2 (green) and SR-K1 (CD44, red) within the tumor nodules. Bottom panels correspond to amplification of the area contained in the white dotted line frame. (H)Scarb1 and Cd44 mRNA expression levels in KPC cells transduced with either a nontargeting sgRNA (n.t.) or four different sgRNAs targeting either Scarb1 (Scarb1CRISPR-KO) or Cd44 (Cd44CRISPR-KO). Dots represent n = 3 independent experiments. (I) Western blotting showing the protein expression of either SCARB1 in nontargeting and Scarb1CRISPR-KO KPC cells, or CD44 in Cd44CRISPR-KO KPC cells. GAPDH is a loading control. (J)Kras mRNA expression in either nontargeting or Scarb1CRISPR-KO KPC cell lines treated with either 0.5 μM or 1 μM cET-ASOKras for 72 h. Two-way ANOVA, Dunnett multiple comparison test, n = 5 independent experiments. (K) Western blotting showing the effect of Scarb1 depletion in Scarb1CRISPR-KO KPC cell lines on the cET-ASOKras–induced activation of ERK1/2 Tyr202/204, p90RSK Ser380, and EPHA2 Ser897 phosphorylation. GAPDH was used as a loading control. (L)SCARB1 and CD44 mRNA expression in H1299 cells transduced with either a nontargeting siRNA or a pooled siRNA for each respective scavenging receptor. Results expressed as the fold change of each mRNA in nontargeting transduced cells, n = 3 independent experiments. (M)KRAS mRNA expression in H1299 cells transduced with either a nontargeting siRNA or a pooled siRNA for each respective scavenging receptor, treated with either 0.5 μM or 1 µM cET-ASOKras for 72 h. Two-way ANOVA, Tukey multiple comparison test, n = 3 independent experiments. (N) Western blotting showing the effect of depletion of SCARB1 and CD44 SRs in H1299 cell lines on the MAPK signalling activation and KRAS expression after 72 h of cET-ASOKras addition. β-tubulin was used as a loading control. Source data are available for this figure: SourceData FS2.
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