Figure S1.
A matrix shows gene names listed along the y-axis and amplicon numbers running along the x-axis from 1 to 53, with additional values extending beyond 53 noted at the right edge. Each cell within the matrix contains a percentage value where data is present, with most values falling in the high 90s. Grey cells indicate that 100 percent of samples achieved the read depth threshold. Non-grey cells display percentage values below 100 percent with most values falling between 92 and 99. A small number of cells display values below 90, with the lowest visible values appearing in a cluster around amplicons 25 to 27, and isolated low values scattered at amplicons 12, 38, and 52. The rightmost section of the matrix contains additional amplicon groupings numbered beyond 53, labeled as 74, 76, 97, 99, 103, 110, and continuing to 139 and beyond, each with corresponding percentage values following the same format as the main matrix. The matrix is arranged in a staircase pattern that decreases from left to right.
Percentage of samples with sufficient read depth per amplicon. For each gene (y-axis) and amplicon (x-axis), the percentage of samples (n total = 170) with a read depth of ≥20× is shown. Only values below 100% are displayed; grey cells indicate amplicons for which 100% of samples achieved ≥20× read depth. For genes with >53 amplicons, results are summarized with amplicons not displayed being 100%.