Figure S1.
Multiple vertical bar graphs and timeline diagrams depict the role of co-stimulation on R O R gamma t positive Treg cell responses in the gut of mice. Panel A: A timeline diagram shows the experimental design where C 57 B L slash 6 J W T mice were colonized with H. hepaticus (H h) on days 0, 2, and 4, followed by H h-specific nave C D 4 positive T cell transfer on day 7, and intraperitoneal injections of B 7 co-stimulation blockade on days 7, 11, and 14. Analysis was conducted on day 17. Panel B: A bar graph shows the frequency of endogenous C D 4 positive T cells in the mesenteric lymph nodes (m L N) of W T mice treated with I g G 2 a slash 2 b or C D 80 slash C D 86. The y-axis represents the percentage of C D 4 positive T cells, and the x-axis shows the treatment groups. Panel C: A bar graph shows the frequency of endogenous C D 4 positive T cells in the large intestine (L I) of W T mice treated with I g G 2 a slash 2 b or C D 80 slash C D 86. The y-axis represents the percentage of C D 4 positive T cells, and the x-axis shows the treatment groups. Panel D: Bar graphs show the frequency and cell number of endogenous R O R gamma t negative Treg cells in the m L N and L I of the mice. The y-axes represent the percentage and cell number of R O R gamma t negative Treg cells, and the x-axes show different mouse genotypes. Panel E: A timeline diagram shows the experimental design where C 57 B L slash 6 J W T or transgenic mice were orally gavaged with H. hepaticus (H h) on days 0, 2, and 4, followed by H h-specific nave C D 4 positive T cell transfer on day 7, and intraperitoneal injections of C T L A 4-I g or anti-C T L A 4 on days 5, 10, 13, and 16. Analysis was conducted on day 18. Panel F: Bar graphs show the ratio between endogenous R O R gamma t positive and R O R gamma t negative Treg cells by frequency and cell number in the m L N of mice treated with I g G 1 F c or C T L A 4-I g. The y-axes represent the ratio of R O R gamma t positive to R O R gamma t negative Treg cells, and the x-axes show the treatment groups. Panel G: Bar graphs show the ratio between endogenous R O R gamma t positive and R O R gamma t negative Treg cells by frequency and cell number in the L I of mice treated with I g G 1 F c or C T L A 4-I g. The y-axes represent the ratio of R O R gamma t positive to R O R gamma t negative Treg cells, and the x-axes show the treatment groups. Panel H: Bar graphs show the frequency and cell number of H h-specific and endogenous R O R gamma t positive Treg cells in the m L N of C d 80 minus minus C d 86 minus minus; C D 80 T g fl slash fl mice and C l e c 9 a C r e C d 80 minus minus C d 86 minus minus; C D 80 T g f l slash f l mice. The y-axes represent the percentage and cell number of R O R gamma t positive Treg cells, and the x-axes show different mouse genotypes. Panel I: Bar graphs show the frequency and cell number of H h-specific and endogenous R O R gamma t positive Treg cells in the L I of C d 80 minus minus C d 86 minus minus; C D 80 T g f l slash f l mice and C l e c 9 a C r e C d 80 minus minus C d 86 minus minus; C D 80 T g f l slash f l mice. The y-axes represent the percentage and cell number of R O R gamma t positive Treg cells, and the x-axes show different mouse genotypes. Panel J: Bar graphs show the frequency and cell number of endogenous R O R gamma t negative Treg cells in the m L N of the mice. The y-axes represent the percentage and cell number of R O R gamma t negative Treg cells, and the x-axes show different mouse genotypes. Panel K: Bar graphs show the frequency and cell number of endogenous R O R gamma t negative Treg cells in the L I of the mice. The y-axes represent the percentage and cell number of R O R gamma t negative Treg cells, and the x-axes show different mouse genotypes.

Experimental designs and immune profiling of RORγt + Treg cells. (A) C57BL/6J WT mice were colonized with Hh on days 0, 2, and 4, followed by Hh-specific naïve CD4+ T cell transfer retro-orbitally on day 7; mice were i.p. injected with blockade of costimulatory molecules B7-1 (CD80) and B7-2 (CD86) on days 7, 11, and 14. Mice were euthanized for analysis on day 17. (B and C) Frequency of endogenous CD4+ T cells in the (B) mLN and (C) LI of WT mice treated with IgG2a/2b (n = 11) or αCD80/αCD86 (n = 11) as shown in Fig. 1, A–C. (D) Frequency and cell number of endogenous RORγt Treg cells in the mLN (left two panels) and LI (right two panels) of the mice in Fig. 1, D–I. (E) C57BL/6J WT or transgenic mice as indicated were orally gavaged with Hh on days 0, 2, and 4, followed by Hh-specific naïve CD4+ T cell transfer retro-orbitally on day 7; mice were i.p. injected with CTLA4-Ig or anti-CTLA4 on days 5, 10, 13, and 16. Mice were euthanized for analysis on day 18. (F and G) Ratio between endogenous RORγt+ and RORγt Treg cells by frequency (left panels) or cell number (right panels) in the (F) mLN and (G) LI of the mice treated with IgG1 Fc (n = 15) or CTLA4-Ig (n = 15) as shown in Fig. 2, A–C. (H and I) Frequencies (left panels in H or I) and cell number (right panels in H or I) of Hh-specific (top panels in H or I) or endogenous (bottom panels in H or I) RORγt+ Treg cells in the (H) mLN and (I) LI of Cd80−/−Cd86−/−; CD80Tgfl/fl mice (n = 4), and Clec9aCreCd80−/−Cd86−/−; CD80Tgfl/fl mice (n = 5). (J and K) Frequency (left panel) and cell number (right panel) of endogenous RORγt Treg cells in the (J) mLN and (K) LI of the mice in Fig. S1, H and I. The data in Fig. S1 are pooled from three independent experiments. The data are shown as means ± SEM; the statistics shown in B, C, F, G, H, I, J, and K were obtained by unpaired Student’s t test (two-tailed); the statistics shown in D were obtained by ordinary one-way ANOVA with Tukey’s multiple comparisons test. ns, not significant; *P < 0.05; **P < 0.01; ***P < 0.001; ****P < 0.0001.

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