Figure S4.
The expression of effector/exhausted molecules across CD8+T cell subsets. (A) Representative plots and cumulative data show the expression of PD-1 and Tox gated on tumor-infiltrating OT-I cells. n = 5 per group. (B) Representative plots and cumulative data show the expression of Tcf1 gated on OT-I cells in TdLNs. n = 4–8 per group. (C) Representative flow cytometry plots and cumulative data show the expression of the indicated molecules gated on tumor-infiltrating CD44+ CD8+ T cells in the B16F10 tumor model: Mettl8fl/fl CD4cre mice and littermate controls were subcutaneously injected with 2 × 105 B16F10 cells. Mice were analyzed at 13 dpi. (D) RNA-seq analysis of Ly108+ Tim3− TPEX, Tim3+ CX3CR1+ Ly108− Int-TEX, and Tim3+ CX3CR1− Ly108− TEX cells gated on tumor-infiltrating WT and Mettl8−/− (KO) OT-I cells. Heatmaps depict stem-like, exhausted and effector-like gene signatures in WT and Mettl8−/− (KO) OT-I cells. (E) Representative flow cytometry plots and cumulative data show the expression of PD-1 and Tox gated on tumor-infiltrating Tcf1+ Tim3− TPEX, CX3CR1+ Tcf1− Int-TEX, and CX3CR1− Tcf1− TEX subsets. n = 5 per group. (F) Diamond graphs show chromatin interactions in WT (left) and Tcf1−/− Lef1−/− dKO (right) CD8+ T cells, with gene structures on the left. (G) Single-cell transcription levels of representative genes illustrated in the UMAP plot. Transcription levels are color coded: gray, not expressed; blue, expressed. (H) Representative flow and cumulative data show the frequencies of CX3CR1, Tim3, and PD-1 in Tcf1+ Tox−, Tcf1− Tox+, and Tcf1+ Tox+ cells, which are gated from B16F10 tumor-infiltrating CD8+ CD44+ T cells. n = 9 per group. (I) Schematic diagram of GA treatment to B16F10 cells in vitro (left) and frequency and absolute number of GA-treated cells (right). n = 3 per group. Data are representative of two independent experiments. P value was calculated by two-tailed Student’s t test; *P < 0.05; **P < 0.01; ***P < 0.001; ****P < 0.0001. Refer to the image caption for details. Panel A shows flow cytometry plots and quantification of P D 1 and T o x expression. Panel B shows flow cytometry plots and quantification of T c f 1 expression. Panel C shows flow cytometry plots and quantification of multiple marker expression. Panel D shows heatmap of stem-like, exhausted, and effector gene signatures. Panel E shows flow cytometry plots and quantification across T cell subsets. Panel F shows chromatin interaction diamond plots comparing wild type and double knockout cells. Panel G shows UMAP plots displaying single cell gene transcription levels. Panel H shows flow cytometry plots and quantification of C X 3 C R 1, T i m 3, and P D 1. Panel I shows schematic diagram and vertical bar graphs of G A treatment results.

The expression of effector/exhausted molecules across CD8 + T cell subsets. (A) Representative plots and cumulative data show the expression of PD-1 and Tox gated on tumor-infiltrating OT-I cells. n = 5 per group. (B) Representative plots and cumulative data show the expression of Tcf1 gated on OT-I cells in TdLNs. n = 4–8 per group. (C) Representative flow cytometry plots and cumulative data show the expression of the indicated molecules gated on tumor-infiltrating CD44+ CD8+ T cells in the B16F10 tumor model: Mettl8fl/fl CD4cre mice and littermate controls were subcutaneously injected with 2 × 105 B16F10 cells. Mice were analyzed at 13 dpi. (D) RNA-seq analysis of Ly108+ Tim3 TPEX, Tim3+ CX3CR1+ Ly108 Int-TEX, and Tim3+ CX3CR1 Ly108 TEX cells gated on tumor-infiltrating WT and Mettl8−/− (KO) OT-I cells. Heatmaps depict stem-like, exhausted and effector-like gene signatures in WT and Mettl8−/− (KO) OT-I cells. (E) Representative flow cytometry plots and cumulative data show the expression of PD-1 and Tox gated on tumor-infiltrating Tcf1+ Tim3 TPEX, CX3CR1+ Tcf1 Int-TEX, and CX3CR1 Tcf1 TEX subsets. n = 5 per group. (F) Diamond graphs show chromatin interactions in WT (left) and Tcf1−/− Lef1−/− dKO (right) CD8+ T cells, with gene structures on the left. (G) Single-cell transcription levels of representative genes illustrated in the UMAP plot. Transcription levels are color coded: gray, not expressed; blue, expressed. (H) Representative flow and cumulative data show the frequencies of CX3CR1, Tim3, and PD-1 in Tcf1+ Tox, Tcf1 Tox+, and Tcf1+ Tox+ cells, which are gated from B16F10 tumor-infiltrating CD8+ CD44+ T cells. n = 9 per group. (I) Schematic diagram of GA treatment to B16F10 cells in vitro (left) and frequency and absolute number of GA-treated cells (right). n = 3 per group. Data are representative of two independent experiments. P value was calculated by two-tailed Student’s t test; *P < 0.05; **P < 0.01; ***P < 0.001; ****P < 0.0001.

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