Figure S1.

Neutrophils and monocytes at the peak of EAE. (A and B) Percentage of RFP-expressing cells in different populations in the RFP CX3CR1-Cre and (B) RFP CD11c-Cre in the dLNs 5 days after MOG immunization. (C) Gating for Ly6G+ neutrophils and Ly6C+ monocytes in the CNS and dLN, gated on CD11b+/live/single cells. (D and E) Cell number and percentages of neutrophils and (E) monocytes in the CNS, dLN, and spleen. (F–H) α-Diversity (Shannon index) of fecal microbiota from naïve control and NIKΔCX3CR1 mice housed under identical SPF conditions. (G) β-Diversity analysis visualized by weighted UniFrac PCoA. (H) Relative abundance of dominant bacterial taxa at the genus level. Data in A, B, D, and E are shown as the mean ± SEM and analyzed using two-way ANOVA with Šídák’s multiple comparisons test. **P < 0.01, ****P < 0.0001. Each dot represents one mouse. Data are from three independent experiments. PCoA, principal coordinates analysis.

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