Related to Fig. 2 . CoMtb alters the immune landscape following Mtb infection. (A) Top 50 differentially expressed genes for necrotic and non-necrotic lesions in Fig. 2 A. (B) Top genes that discriminate scRNAseq clustering into the specific cell types in Fig. 2 C. (C) Pulmonary bacterial burdens corresponding to Fig. 2 E. (D) Lymphoid flow cytometry gating scheme for Fig. 2 E. (E) Myeloid flow cytometry gating scheme for Fig. 2 E. (F) Neutrophil pseudotime analysis showing differentially expressed genes within low (<25), intermediate (25–75), and high (>75) groups. Single-group comparisons by unpaired t test. *P < 0.05, ****P < 0.0001, and ns, P ≧ 0.05. Correlations by Pearson’s correlation test.