Figure S3.

R-eTACs represent a putatievly myeloid population with characteristics distinct from DCs . Related to Fig. 3. (A) Flow cytometry plot showing the gating of R-eTAC1s (EpCAMCCR7) and R-eTAC3s (EpCAM+). This gating is from the R-eTAC1/3 shown in Fig. 3 A. (B) Flow cytometry plots showing the gating of R-mDCs (CCR7+), R-cDC1s (XCR1+SIRPα), and R-cDC2s (XCR1SIRPα+) from the R-DC shown in Fig. 3 A. (C) Flow cytometry validation of intracellular Aire staining between WT and germline Aire−/− mice. (D) Flow cytometry plots of intracellular RORγt staining on the MHCII+Aire+ cells. (E) Flow cytometry quantification of GFP+tdTmt+ percentage of parent (left) and absolute counts per mouse (right) from all pooled LNs from RORγt lineage–tracing mice with Aire reporter at various ages, gated on single, live, Lin cells (n = 3). (F) Quantification of the proliferation of OT-II cells cocultured with R-eTACs (GFP+tdTmt+) versus DCs (GFPCD11c+) in the presence of OVA peptide after 72 h. (G) Experimental setup similar to Fig. 3 H. Quantification of R-eTAC subsets from the Aire+MHCII+ cells in the Il7r−/− or WT-derived portions of the BM (n = 5). (H and I) Experimental setup similar to Fig. 3 H, except with Rag2−/−Il2rg−/− BM cells instead of Il7r−/−. Quantification of ILCs (CD90.2+CD127+), DCs (CD11c+MHCII+), and R-eTACs (Aire+MHCII+) (H) and R-eTAC subsets (I) from LNs of Rag2−/−Il2rg−/− mixed BMC mice (n = 3). (J) Quantification of DCs, ILCs, and R-eTACs from LNs of neonatal mice gavaged once with PBS or R848 and harvested 24 h later (n = 4 from each group, each dot is pooled from three mice). (K) WT mice were intraperitoneally treated with either isotype (Iso) or recombinant Flt3L (rFlt3L) for 7 days. DCs and R-eTACs were quantified from LNs (n = 10 from each group). (L) WT mice were intraperitoneally treated with either isotype (Iso) or anti-Flt3L antibody (αFlt3L) for 7 days. DCs and R-eTACs were quantified from the spleen (n = 20 from each group). (M) Flow cytometry quantification of DC subsets and R-eTACs from Clec9aCreER×Rosa26-LSL-tdTmt mice LNs (n = 6). Mice were put on tamoxifen chow for 1 wk to induce labeling. (N) Flow cytometry quantification of monocytes, R-eTACs, DCs, and B cells from Ms4a3Cre×Rosa26-LSL-tdTmt mouse LNs (n = 10). Data in E are from one independent experiments. Data in F–I are representative of at least three independent experiments. Data in J–N are pooled from two to three independent experiments. Error bars: mean ± SEM; statistics were calculated by one-way ANOVA with Tukey’s multiple comparisons test (F) or unpaired two-sided t test (G–I, K, and L); ***P < 0.0005, ****P < 0.0001.

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