Figure 5.

Structural modeling reveals a unique interface between TAX1BP1 and NBR1. (A) HEK293T cells were co-transfected with full-length (FL) myc-TAX1BP1 and indicated BFP-V5-NBR1FL variants. Extracts derived from transfected cells were immunoprecipitated (IP) with protein G dynabeads conjugated with anti-V5 antibody. Input and eluates were resolved by SDS-PAGE followed by immunoblotting (IB) with the indicated antibodies. (B) Predictive structural model of NBR1725–749 with a dimer TAX1BP1CC2. The model was generated using AlphaFold AF2-multimer with MMseqs2 through Google Colab. The TIR inset highlights the hydrophobic binding pocket occupied by NBR1F740 and the backbone interactions mediated by TAX1BP1R441. The LIR inset highlights the lack of meaningful interactions between NBR1LIR and TAX1BP1CC2. (C) Predicted IDDT per position (pLDDT) for NBR1725–749 as an estimation of model confidence. Blue is high confidence, orange is low confidence. (D) HEK293T cells were co-transfected with full-length (FL) myc-NBR1 and indicated BFP-V5-TAX1BP1 variants. Extracts derived from transfected cells were immunoprecipitated (IP) with protein G dynabeads conjugated with anti-V5 antibody. Input and eluates were resolved by SDS-PAGE followed by immunoblotting (IB) with the indicated antibodies. Source data are available for this figure: SourceData F5.

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