Roles of Tim23–Tim50 interactions in the IMS in the late step of protein translocation across the inner membrane. (A) Mitochondria isolated from wild-type control (WT), in which Tim23 is supplied from the plasmid, and tim23 mutant cells were incubated in import buffer containing 0.05% BSA and 75 mM disuccinimidylglutarate on ice for 30 min. After quenching the reaction with 50 mM Tris-HCl, pH 7.4, Tim23 dimer formation was analyzed by SDS-PAGE followed by immunoblotting with anti-Tim23 antibodies. The amount of the Tim23 dimer in wild-type mitochondria was set to 100%. (B) Radiolabeled Tim23 was imported into wild-type mitochondria (WT) with or without Tim23FLAG and into tim50-279,282,286 mitochondria (T) with Tim23FLAG for 20 min at 25°C and PK treated. The mitochondria was solubilized with 1.0% digitonin and subjected to coimmunoprecipitation with the anti-FLAG antibody. Proteins were analyzed by SDS-PAGE followed by radioimaging and immunoblotting with indicated antibodies before and after import. (C) Radiolabeled pb2(220)Δ19-DHFR was incubated with mitochondria for 20 min at 30°C in the presence of 10 mM methotrexate and 100 mM NADPH. The mitochondria were treated with 20 mg/ml PK for 20 min on ice. PK treatment was stopped by addition of 1 mM PMSF, and the mitochondria were reisolated by centrifugation. Proteins were analyzed by SDS-PAGE and radioimaging (top). The amounts of the PK-resistant processed intermediate (i) were quantified (bottom). The amounts of the processed intermediate without PK treatment are set to 100%. p, precursor form. (D) Serial dilutions of wild-type, tim23, and tim50 mutant strains carrying yeast 2μ plasmid, pYO326-TIM23, and pYO325-SSC1 were plated on SD (−Ura, −Trp, −Leu; left) and SD (−Trp, −Leu, and +1 mg/ml 5′-fluoroorotic acid; right) and grown for 4 d at 23°C. (E) Serial dilutions of tim23-64,71,78 carrying yeast 2μ plasmid (pYO326) encoding indicated genes were plated on YPD plates and grown for 2 d at 30 or 35°C. (F) Serial dilutions of tim23 and tim50 mutant strains lacking the PAM17 gene with plasmid, pRS316-Tim23Δ50, and pRS316-Tim50, respectively, were plated on a SCD (−Trp and +FOA) plate. Error bars represent SDs from three independent experiments.