Table 1. Evaluation of the segmentation... | Rockefeller University Press

Table 1.

Evaluation of the segmentation on the synaptosomal train set

Dataset	Map DICE	Final DICE	δ_d	Δ_c (nm)	Number of Vesicles	TP	FN	FP	F1-score
SC 1	0.72	0.78	0.08	2.55 ± 1.91	223	188	35	19	0.874
SC 2	0.84	0.91	0.06	2.08 ± 1.06	105	104	1	1	0.990
SC 3	0.82	0.92	0.05	1.77 ± 0.85	128	128	0	2	0.992
SC 4	0.83	0.89	0.03	1.78 ± 0.9	144	138	6	2	0.972
SC 5	0.79	0.86	0.04	1.84 ± 1.01	214	190	24	3	0.934
SC 6	0.76	0.88	0.04	1.86 ± 1.03	104	102	2	7	0.958
SC 7	0.78	0.90	0.06	1.92 ± 0.94	184	184	0	10	0.974
SC 8	0.81	0.90	0.05	1.76 ± 1.12	132	128	4	1	0.981
SC 9	0.82	0.91	0.05	2.0 ± 1.15	135	132	3	3	0.978
Average	0.80 ± 0.04	0.88 ± 0.04	0.05 ± 0.01	1.95 ± 1.11	152.11	95.64%	4.36%	3.25%	0.961 ± 0.04

Dataset	Map DICE	Final DICE	δ_d	Δ_c (nm)	Number of Vesicles	TP	FN	FP	F1-score
SC 1	0.72	0.78	0.08	2.55 ± 1.91	223	188	35	19	0.874
SC 2	0.84	0.91	0.06	2.08 ± 1.06	105	104	1	1	0.990
SC 3	0.82	0.92	0.05	1.77 ± 0.85	128	128	0	2	0.992
SC 4	0.83	0.89	0.03	1.78 ± 0.9	144	138	6	2	0.972
SC 5	0.79	0.86	0.04	1.84 ± 1.01	214	190	24	3	0.934
SC 6	0.76	0.88	0.04	1.86 ± 1.03	104	102	2	7	0.958
SC 7	0.78	0.90	0.06	1.92 ± 0.94	184	184	0	10	0.974
SC 8	0.81	0.90	0.05	1.76 ± 1.12	132	128	4	1	0.981
SC 9	0.82	0.91	0.05	2.0 ± 1.15	135	132	3	3	0.978
Average	0.80 ± 0.04	0.88 ± 0.04	0.05 ± 0.01	1.95 ± 1.11	152.11	95.64%	4.36%	3.25%	0.961 ± 0.04

Map DICE: soft DICE for the predicted map; Final DICE: final DICE after post-processing; δ d: average relative diameter deviation over all correctly detected vesicles; Δ c: center residual error average and SD (nm); Number of Vesicles: number of expected vesicles; TP: True Positive; FN: False Negative; FP: False Positive; F1-score: F1-score based on TP, FN, and FP.

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