Plasmids and primers used in this study
| Expression in Dictyostelium cells . | |||
|---|---|---|---|
| Usage . | Plasmid backbone . | Sequence, 5′-3′ . | |
| GxcM-GFP or GxcM-RFP | pDM323 or pDM451 | F: 5′-GGAAAGTCGACAAAGCTAGCAGTAAAATAAAAATGAAAATTAAATTTTTTCGATATG-3′ | |
| R: 3′-GTTCTTCTCCTTTACCACTACTAGATTTTCTTGGTGGAATGATTGG-5′ | |||
| GxcMN790-GFP | pDM323 | F: 5′-GGAGCTCAAATAAAAATGAAAATTAAATTTTTTCGATATG-3′ | |
| R: 3′-GGACTAGTACTTCTTTTAATATGATCTAAAAC-5′ | |||
| GxcMN790-RFP | pDM451 | F: 5′-CCGGAGCTCAAATAAAAATGAAAATTAAATTTTTTCGATATG-3′ | |
| R: 3′-CTAGCTAGCACTTCTTTTAATATGATCTAAAACTTTATC-5′ | |||
| GxcM4A-GFP or GxcM4A-RFP | pDM323 or pDM451 | F1: 5′-GAGAGTTTTCTAATTAAAGCAGCAGCAGCACTTTGTAAATATCCATTAC-3′ | |
| R1: 3′-GTAATGGATATTTACAAAGTGCTGCTGCTGCTTTAATTAGAAAACTCTC-5′ | |||
| F: 5′-CCGGAGCTCAAATAAAAATGAAAATTAAATTTTTTCGATATG-3′ | |||
| R: 3′-CTAGCTAGCTTTTCTTGGTGGAATGATTGGTTTTTTAG-5′ | |||
| GxcMN455-GFP | pDM323 | F: 5′-GGAGCTCAAATAAAAATGAAAATTAAATTTTTTCGATATG-3′ | |
| R: 3′-CGGACTAGTCATTTTATTTTCACCTTCTTCTTTCATTAC-5′ | |||
| GxcMN456-770-GFP | pDM323 | F: 5′-GGGGAGCTCATGAGAAACATGGTAATTAATG-3′ | |
| R: 3′-CGGACTAGTTTTAATTAATTCATCCAAATCAG-5′ | |||
| GxcM | pDM358 | F: 5′-CCGGAGCTCAAATAAAAATGAAAATTAAATTTTTTCGATATG-3′ | |
| R: 3′-CTAGCTAGCTTTTCTTGGTGGAATGATTGGTTTTTTAG-5′ | |||
| GFP-Fbp17 or RFP-Fbp17 | pDM317 or pDM449 | F: 5′-CCGGAGCTCATGAGTTATTCAACCGATTTATTAGATGG-3′ | |
| R: 3′-CTAGCTAGCACCATCGATGATGTCAACAAAATTGGCCGGAATG-5′ | |||
| GFP-Fbp17ΔSH3 or RFP-Fbp17ΔSH3 | pDM317 or pDM449 | F: 5′-CCGGAGCTCATGAGTTATTCAACCGATTTATTAGATGG-3′ | |
| R: 3′-CTAGCTAGCCAATTCCTCCAATTGAGCAGTGATAAG-5′ | |||
| GFP-Fbp17SH3 or RFP-Fbp17SH3 | pDM317 or pDM449 | F: 5′-CCGGAGCTCGGTAAAACTAATCTTTCTGGTTCAAG-3′ | |
| R: 3′-CTAGCTAGCACCATCGATGATGTCAACAAAATTGG-5′ | |||
| GFP-Fbp17F-BAR or RFP-Fbp17F-BAR | pDM317 or pDM449 | F: 5′-CCGGAGCTCGGTAAAACTAATCTTTCTGGTTCAAG-3′ | |
| R: 3′-CTAGCTAGCGGTGCCAACTCTAAAGTTTGTTGGAGAG-5′ | |||
| GFP-Fbp17ΔBAR or RFP-Fbp17ΔBAR | pDM317 or pDM449 | F: 5′-CCGGAGCTCCAGATCGACAAGGACGCTGATATCCGTC-3′ | |
| R: 3′-CTAGCTAGCACCATCGATGATGTCAACAAAATTGGCCG-5′ | |||
| GFP-WASP | pDM317 | F: 5′-CTATCTAGAATGGGTAGTCCAACTATTAGTGATC-3′ | |
| R: 3′-CTAGTCGACATAATCTGACCATTCATCATCGTC-5′ | |||
| GFP-ArpC4 | pDM317 | F: 5′-GGGGTACCATGTCCACAGCTCAAGTTCCATATTTAAATTG-3′ | |
| R: 3′-CGAGCGGCCGCAGCAAAGTTCTTTAAGTATTCAGAAGCAAC-5′ | |||
| RFP-ArpC4 | pDM449 | F: 5′-CGGGATCCATGTCCACAGCTCAAGTTCCATATTTAAATTG-3′ | |
| R: 3′-GCTCTAGAAGCAAAGTTCTTTAAGTATTCAGAAGCAAC-5′ | |||
| GFP-Coronin A | pDM317 | F: 5′-GGTCTAGAATGTCTAAAGTAGTCCGTAGTAG-3′ | |
| R: 3′-CCGGCGGCCGCGTTGGTGAGTTCTTTGATTTTGGC-5′ | |||
| GFP-RacC | pDM317 | F: 5′-CCGGAGCTCATGTCAGCAGCAGAAGTTATTAAATTAG-3′ | |
| R: 3′-CTAGCTAGCTTACATAACAATACACTTGGATTTCTTTTTTTTG-5′ | |||
| GFP-RacCG15V | pDM317 | F: 5′-GTTGCTGTAGGTAAAACTTGTTTATTGATTAG-3′ | |
| R: 3′-ATCACCAATAACGACTAATTTAATAACTTC-5′ | |||
| tet on GFP-RacCG15V | pDM371 | F: 5′-CGCGGATCCATGTCAGCAGCAGAAGTTATTAAATTAG-3′ | |
| R: 3′-CGGACTAGTTTACATAACAATACACTTGGATTTCTTTTTTTTG-5′ | |||
| tet on GFP-RacCQ64L | pDM371 | F: 5′-CTTTGGGATACTGCAGGTTTAGAAGAGTACGATAAATTAAG-3′ | |
| R: 3′-CTTAATTTATCGTACTCTTCTAAACCTGCAGTATCCCAAAG-5′ | |||
| tet on RFP-RacCG15V | pDM359 | F: 5′-CGCGGATCCATGGCATCATCAGAAGATGTTATTAAAGAATTTATG-3′ | |
| R: 3′-CGGACTAGTTTACATAACAATACACTTGGATTTCTTTTTTTTG-5′ | |||
| GFP-Rac1A | pDM317 | F: 5′-CCGGAGCTCATGCAAGCAATTAAATGTGTCGTTGTCGGT-3′ | |
| R: 3′-CTAGCTAGCTAAAATGTTGCAACCACCTGAACTTTTCTTCTTTTTGC-5′ | |||
| GFP-ABD | pCV5 | F: 5′-CCGGAGCTCATGGCTGCTGCTCCAAGTGGAAAAAC-3′ | |
| R: 3′-CAGGCTCGAGGGCATCTGAAGTTTCACGACGTTTCTTTTC-5′ | |||
| GFP-Myosin II | pCV5 | F: 5′-CCGGAGCTCAATCCAATTCATGATAGAACTTCAGATTATC-3′ | |
| R: 3′-CAGGCTCGAGTTAAGCTTTGAAACCACCAAAGAAATCGGC-5′ | |||
| GFP-CLC | pDM317 | F: 5′-CAGGAGCTCATGTCAGATCCATTTGGTGAAG-3′ | |
| R: 3′-CTAGCTAGCAACAATTGGTTGATTTTTTAAACG-5′ | |||
| Generation of knockout cells | |||
| gxcM knockout | pBluescript-BSR | Insert 1 F: 5′-CACGGTACCGATACCATCATCGATGATATCAC-3′ | |
| Insert 1 R: 3′-GCCGGAATTCGTGGTGGTATTATTTGATGATG-5′ | |||
| Insert 2 F: 5′-CGGACTAGTGTAAAGTTACAACACCAATTTCTACAC-3′ | |||
| Insert 2 R: 3′-CGGCGGCCGCTTATTTTCTTGGTGGAATGATTGG-5′ | |||
| fbp17 knockout | pBluescript-BSR | Insert 1 F: 5′-CACGGTACCCGTGTATTTCTAAACTATTTTATAC-3′ | |
| Insert 1 R: 3′-GAGAAGCTTCATCTAATAAATCGGTTGAATAACTCAT-5′ | |||
| Insert 2 F: 5′-CGGACTAGTCCAATTTTGTTGACATCATCGATG-3′ | |||
| Insert 2 R: 3′-CGGCGGCCGCGATTAAGGTTGGTATTTTTGAAAG-5′ | |||
| racC knockout | pBluescript-BSR | Insert 1 F: 5′-GACGTCGACCCCCCCTAACATTAAAAGTATTAATAATAG-3′ | |
| Insert 1 R: 3′-GAGAAGCTTCCCTACAGCACCATCACCAATAACG-5′ | |||
| Insert 2 F: 5′-CGGACTAGTGGAATGTTCTGCCAAAACCTCACAAAATCTC-3′ | |||
| Insert 2 R: 3′-CGGCGGCCGCGGTGGCTTCCTAATTTGCCTTTTCTCAAAG-5′ | |||
| wasA knockout | pBluescript-BSR | Insert 1 F: 5′-GACGTCGACGGTATTATATATTGTTCATTTGCATTGGTTT-3′ | |
| Insert 1 R: 3′-GAGAAGCTTCATACAATCTTGCAACAGTAGTTGAATG-5′ | |||
| Insert 2 F: 5′-CGGACTAGTCTATGGCTAATCGTAGAGGTGGTATGAGA-3′ | |||
| Insert 2 R: 3′-CGGCGGCCGCCTGGTAATGTTTTATGACTTGATGTAAATG-5′ | |||
| Expression in bacteria or insect cells | |||
| GST-Fbp17 | pFastBac1-GST | F: 5′-GAGCATATGATGAGTTATTCAACCGATTTATTAGATGGATTTGAAAGATTATATAAAAGAACtTATGGTGTTTTAAAATGTAATC-3′ | |
| R: 3′-TGCTCTAGATTAACCATCGATGATGTCAACAAAATTGGC-5′ | |||
| GST-WASP | pFastBac1-GST | F: 5′-GAGCATATGATGGGTAGTCCAACTATTAGTGATCAAG-3′ | |
| R: 3′-TGCTCTAGAATAATCTGACCATTCATCATCGTCATCATCATC-5′ | |||
| GST-WASPVCA | pGEX-6P-1 | F: 5′-CGCGGATCCCCATCATCAGGAGGTGGTGGTGCC-3′ | |
| R: 3′-TGCTCTAGATTAATAATCTGACCATTCATCATCGTCATC-5′ | |||
| GST-Fbp17SH3 | pGEX-6P-1 | F: 5′-CGCGGATCCGCTGGTGCAACTGGTGGTGCCACTAGAG-3′ | |
| R: 3′-CAGGCTCGAGACCATCGATGATGTCAACAAAATTGGC-5′ | |||
| His-MBP-Fbp17SH3 | pET-MBP-3C | F: 5′-CGCGGATCCGCTGGTGCAACTGGTGGTGCCACTAGAG-3′ | |
| R: 3′-CAGGCTCGAGACCATCGATGATGTCAACAAAATTGGC-5′ | |||
| Expression in yeast cells | |||
| Fbp17 | pGADT7 | F: 5′-GAGCATATGATGAGTTATTCAACCGATTTATTAGATGG-3′ | |
| R: 3′-CGCGGATCCACCATCGATGATGTCAACAAAATTGGCCGG-5′ | |||
| WASPN126-230 | pGADT7 | F: 5′-GAGCATATGATTGGTAAAACTGCTGCAATTAATCCAAATAC-3′ | |
| R: 3′-GG AGATCTACCAATGATATTGACAATGAATTGAGCAG-5′ | |||
| Rac1AG12V | pGBKT7 | F: 5′-GTTGCTGTAGGTAAAACCTGTCTTTTAATTTC-3′ | |
| R: 3′-ATCACCGACAACGACACATTTAATTGCTTG-5′ | |||
| Rac1BG12V | pGBKT7 | F: 5′-GTTGCAGTTGGTAAAACATGTCTTTTAATTTC-3′ | |
| R: 3′-ATCACCAACAACTACACATTTAATTGC-5′ | |||
| Rac1CG12V | pGBKT7 | F: 5′-GTTGCGGTTGGTAAAACATGTCTTTTAATTTC-3′ | |
| R: 3′-ATCACCTACAACTACACATTTAATTGC-5′ | |||
| RacAG12V | pGBKT7 | F: 5′-GTTGCTGTAGGTAAAAGTTGTTTATTAATTGC-3′ R: 3′-ATCACCTACTACTACTAATTTAATTGC-5′ | |
| RacBG12V | pGBKT7 | F: 5′-GTTGCTGTTGGTAAAACTTGTTTATTAATTTC-3′ | |
| R: 3′-ATCACCTACTACCACCAATTTAATTGATTG-5′ | |||
| RacCG15V | pGBKT7 | F: 5′-GTTGCTGTAGGTAAAACTTGTTTATTGATTAG-3′ | |
| R: 3′-ATCACCAATAACGACTAATTTAATAACTTC-5′ | |||
| RacDG17V | pGBKT7 | F: 5′-GTTGCTGTTGGTAAAACTTCACTTTTAATTTTATATAC-3′ | |
| R: 3′-ATCACCTACAACTACTACTTTAACAG-5′ | |||
| RacEG20V | pGBKT7 | F: 5′-GTTGCTGTTGGTAAAACATGTCTTTTAATTTG-3′ | |
| R: 3′-ATCACCGACAACTACTAATTTAACTCTTG-5′ | |||
| RacF1G12V | pGBKT7 | F: 5′-GTTGCAGTTGGTAAAACCTGTATGTTAATTTC-3′ | |
| R: 3′-ATCACCAACAACAACACATTTAATATTTTG-5′ | |||
| RacF2G12V | pGBKT7 | F: 5′-GTTGCAGTTGGTAAAACTTGTATGTTAATTTC-3′ | |
| R: 3′-ATCACCAACAACAACACATTTAATATTTTG-5′ | |||
| RacGG12V | pGBKT7 | F: 5′-GTTGGAATTGGTAAAACATCAATGTTATTAAG-3′ | |
| R: 3′-TTCGCCAACAACACAAACTTTAATACTTTTC-5′ | |||
| RacHM13V | pGBKT7 | F: 5′-GTTAGTGTAGGTAAGACATGTTTACTCATTTC-3′ | |
| R: 3′-ATCACCTACAACCATTACTTTAATATCTTTTAC-5′ | |||
| RacIS14V | pGBKT7 | F: 5′-GTTAAAACTGGAAAAACTACAATGATGATGAC-3′ | |
| R: 3′-ATCACCTAATACTAATAACTTTATATATG-5′ | |||
| RacJD18V | pGBKT7 | F: 5′-GTTGGAGTTGGTAAATCATGTGTAATGAACTC-3′ | |
| R: 3′-ATCTCCAAGACAAAATATTTTAAC-5′ | |||
| RacLG12V | pGBKT7 | F: 5′-GTTGCAGTTGGTAAAACAAGTTTATTAATTGC-3′ | |
| R: 3′-ATCACCACAAATTACCATTTTTATATATTGC-5′ | |||
| RacMY14V | pGBKT7 | F: 5′-GTTGGTGTTGGTAAAACCACCCTATTAATGAC-3′ | |
| R: 3′-ATCGCCAATCGTAACTATTTTAATAG-5′ | |||
| RacNG14V | pGBKT7 | F: 5′-TTAGAGGATTATCCTCGTATAAGACCATTATC-3′ | |
| R: 3′-ACCACCAGTATCCCAACAACCAATTCTC-5′ | |||
| RacOG13V | pGBKT7 | F: 5′-GTTTTAATTGGTAAAACTACATTATTAATGAC-3′ | |
| R: 3′-ATCACCAACTGTCACTATCTTTACTTC-5′ | |||
| RacPG58V | pGBKT7 | F: 5′-GTTTACTGTTGGAAAAACAACACTCTTATTATC-3′ | |
| R: 3′-ATCACCTACAACACCACATTTAATAACCTTTG-5′ | |||
| Other plasmids for expression in Dictyostelium cells | |||
| PHcrac-GFP | Peter Devreotes Laboratory, Johns Hopkins University | ||
| LimEΔcoil-GFP | Peter Devreotes Laboratory, Johns Hopkins University | ||
| LimEΔcoil-RFP | Douglas Robinson Laboratory, Johns Hopkins University | ||
| Expression in Dictyostelium cells . | |||
|---|---|---|---|
| Usage . | Plasmid backbone . | Sequence, 5′-3′ . | |
| GxcM-GFP or GxcM-RFP | pDM323 or pDM451 | F: 5′-GGAAAGTCGACAAAGCTAGCAGTAAAATAAAAATGAAAATTAAATTTTTTCGATATG-3′ | |
| R: 3′-GTTCTTCTCCTTTACCACTACTAGATTTTCTTGGTGGAATGATTGG-5′ | |||
| GxcMN790-GFP | pDM323 | F: 5′-GGAGCTCAAATAAAAATGAAAATTAAATTTTTTCGATATG-3′ | |
| R: 3′-GGACTAGTACTTCTTTTAATATGATCTAAAAC-5′ | |||
| GxcMN790-RFP | pDM451 | F: 5′-CCGGAGCTCAAATAAAAATGAAAATTAAATTTTTTCGATATG-3′ | |
| R: 3′-CTAGCTAGCACTTCTTTTAATATGATCTAAAACTTTATC-5′ | |||
| GxcM4A-GFP or GxcM4A-RFP | pDM323 or pDM451 | F1: 5′-GAGAGTTTTCTAATTAAAGCAGCAGCAGCACTTTGTAAATATCCATTAC-3′ | |
| R1: 3′-GTAATGGATATTTACAAAGTGCTGCTGCTGCTTTAATTAGAAAACTCTC-5′ | |||
| F: 5′-CCGGAGCTCAAATAAAAATGAAAATTAAATTTTTTCGATATG-3′ | |||
| R: 3′-CTAGCTAGCTTTTCTTGGTGGAATGATTGGTTTTTTAG-5′ | |||
| GxcMN455-GFP | pDM323 | F: 5′-GGAGCTCAAATAAAAATGAAAATTAAATTTTTTCGATATG-3′ | |
| R: 3′-CGGACTAGTCATTTTATTTTCACCTTCTTCTTTCATTAC-5′ | |||
| GxcMN456-770-GFP | pDM323 | F: 5′-GGGGAGCTCATGAGAAACATGGTAATTAATG-3′ | |
| R: 3′-CGGACTAGTTTTAATTAATTCATCCAAATCAG-5′ | |||
| GxcM | pDM358 | F: 5′-CCGGAGCTCAAATAAAAATGAAAATTAAATTTTTTCGATATG-3′ | |
| R: 3′-CTAGCTAGCTTTTCTTGGTGGAATGATTGGTTTTTTAG-5′ | |||
| GFP-Fbp17 or RFP-Fbp17 | pDM317 or pDM449 | F: 5′-CCGGAGCTCATGAGTTATTCAACCGATTTATTAGATGG-3′ | |
| R: 3′-CTAGCTAGCACCATCGATGATGTCAACAAAATTGGCCGGAATG-5′ | |||
| GFP-Fbp17ΔSH3 or RFP-Fbp17ΔSH3 | pDM317 or pDM449 | F: 5′-CCGGAGCTCATGAGTTATTCAACCGATTTATTAGATGG-3′ | |
| R: 3′-CTAGCTAGCCAATTCCTCCAATTGAGCAGTGATAAG-5′ | |||
| GFP-Fbp17SH3 or RFP-Fbp17SH3 | pDM317 or pDM449 | F: 5′-CCGGAGCTCGGTAAAACTAATCTTTCTGGTTCAAG-3′ | |
| R: 3′-CTAGCTAGCACCATCGATGATGTCAACAAAATTGG-5′ | |||
| GFP-Fbp17F-BAR or RFP-Fbp17F-BAR | pDM317 or pDM449 | F: 5′-CCGGAGCTCGGTAAAACTAATCTTTCTGGTTCAAG-3′ | |
| R: 3′-CTAGCTAGCGGTGCCAACTCTAAAGTTTGTTGGAGAG-5′ | |||
| GFP-Fbp17ΔBAR or RFP-Fbp17ΔBAR | pDM317 or pDM449 | F: 5′-CCGGAGCTCCAGATCGACAAGGACGCTGATATCCGTC-3′ | |
| R: 3′-CTAGCTAGCACCATCGATGATGTCAACAAAATTGGCCG-5′ | |||
| GFP-WASP | pDM317 | F: 5′-CTATCTAGAATGGGTAGTCCAACTATTAGTGATC-3′ | |
| R: 3′-CTAGTCGACATAATCTGACCATTCATCATCGTC-5′ | |||
| GFP-ArpC4 | pDM317 | F: 5′-GGGGTACCATGTCCACAGCTCAAGTTCCATATTTAAATTG-3′ | |
| R: 3′-CGAGCGGCCGCAGCAAAGTTCTTTAAGTATTCAGAAGCAAC-5′ | |||
| RFP-ArpC4 | pDM449 | F: 5′-CGGGATCCATGTCCACAGCTCAAGTTCCATATTTAAATTG-3′ | |
| R: 3′-GCTCTAGAAGCAAAGTTCTTTAAGTATTCAGAAGCAAC-5′ | |||
| GFP-Coronin A | pDM317 | F: 5′-GGTCTAGAATGTCTAAAGTAGTCCGTAGTAG-3′ | |
| R: 3′-CCGGCGGCCGCGTTGGTGAGTTCTTTGATTTTGGC-5′ | |||
| GFP-RacC | pDM317 | F: 5′-CCGGAGCTCATGTCAGCAGCAGAAGTTATTAAATTAG-3′ | |
| R: 3′-CTAGCTAGCTTACATAACAATACACTTGGATTTCTTTTTTTTG-5′ | |||
| GFP-RacCG15V | pDM317 | F: 5′-GTTGCTGTAGGTAAAACTTGTTTATTGATTAG-3′ | |
| R: 3′-ATCACCAATAACGACTAATTTAATAACTTC-5′ | |||
| tet on GFP-RacCG15V | pDM371 | F: 5′-CGCGGATCCATGTCAGCAGCAGAAGTTATTAAATTAG-3′ | |
| R: 3′-CGGACTAGTTTACATAACAATACACTTGGATTTCTTTTTTTTG-5′ | |||
| tet on GFP-RacCQ64L | pDM371 | F: 5′-CTTTGGGATACTGCAGGTTTAGAAGAGTACGATAAATTAAG-3′ | |
| R: 3′-CTTAATTTATCGTACTCTTCTAAACCTGCAGTATCCCAAAG-5′ | |||
| tet on RFP-RacCG15V | pDM359 | F: 5′-CGCGGATCCATGGCATCATCAGAAGATGTTATTAAAGAATTTATG-3′ | |
| R: 3′-CGGACTAGTTTACATAACAATACACTTGGATTTCTTTTTTTTG-5′ | |||
| GFP-Rac1A | pDM317 | F: 5′-CCGGAGCTCATGCAAGCAATTAAATGTGTCGTTGTCGGT-3′ | |
| R: 3′-CTAGCTAGCTAAAATGTTGCAACCACCTGAACTTTTCTTCTTTTTGC-5′ | |||
| GFP-ABD | pCV5 | F: 5′-CCGGAGCTCATGGCTGCTGCTCCAAGTGGAAAAAC-3′ | |
| R: 3′-CAGGCTCGAGGGCATCTGAAGTTTCACGACGTTTCTTTTC-5′ | |||
| GFP-Myosin II | pCV5 | F: 5′-CCGGAGCTCAATCCAATTCATGATAGAACTTCAGATTATC-3′ | |
| R: 3′-CAGGCTCGAGTTAAGCTTTGAAACCACCAAAGAAATCGGC-5′ | |||
| GFP-CLC | pDM317 | F: 5′-CAGGAGCTCATGTCAGATCCATTTGGTGAAG-3′ | |
| R: 3′-CTAGCTAGCAACAATTGGTTGATTTTTTAAACG-5′ | |||
| Generation of knockout cells | |||
| gxcM knockout | pBluescript-BSR | Insert 1 F: 5′-CACGGTACCGATACCATCATCGATGATATCAC-3′ | |
| Insert 1 R: 3′-GCCGGAATTCGTGGTGGTATTATTTGATGATG-5′ | |||
| Insert 2 F: 5′-CGGACTAGTGTAAAGTTACAACACCAATTTCTACAC-3′ | |||
| Insert 2 R: 3′-CGGCGGCCGCTTATTTTCTTGGTGGAATGATTGG-5′ | |||
| fbp17 knockout | pBluescript-BSR | Insert 1 F: 5′-CACGGTACCCGTGTATTTCTAAACTATTTTATAC-3′ | |
| Insert 1 R: 3′-GAGAAGCTTCATCTAATAAATCGGTTGAATAACTCAT-5′ | |||
| Insert 2 F: 5′-CGGACTAGTCCAATTTTGTTGACATCATCGATG-3′ | |||
| Insert 2 R: 3′-CGGCGGCCGCGATTAAGGTTGGTATTTTTGAAAG-5′ | |||
| racC knockout | pBluescript-BSR | Insert 1 F: 5′-GACGTCGACCCCCCCTAACATTAAAAGTATTAATAATAG-3′ | |
| Insert 1 R: 3′-GAGAAGCTTCCCTACAGCACCATCACCAATAACG-5′ | |||
| Insert 2 F: 5′-CGGACTAGTGGAATGTTCTGCCAAAACCTCACAAAATCTC-3′ | |||
| Insert 2 R: 3′-CGGCGGCCGCGGTGGCTTCCTAATTTGCCTTTTCTCAAAG-5′ | |||
| wasA knockout | pBluescript-BSR | Insert 1 F: 5′-GACGTCGACGGTATTATATATTGTTCATTTGCATTGGTTT-3′ | |
| Insert 1 R: 3′-GAGAAGCTTCATACAATCTTGCAACAGTAGTTGAATG-5′ | |||
| Insert 2 F: 5′-CGGACTAGTCTATGGCTAATCGTAGAGGTGGTATGAGA-3′ | |||
| Insert 2 R: 3′-CGGCGGCCGCCTGGTAATGTTTTATGACTTGATGTAAATG-5′ | |||
| Expression in bacteria or insect cells | |||
| GST-Fbp17 | pFastBac1-GST | F: 5′-GAGCATATGATGAGTTATTCAACCGATTTATTAGATGGATTTGAAAGATTATATAAAAGAACtTATGGTGTTTTAAAATGTAATC-3′ | |
| R: 3′-TGCTCTAGATTAACCATCGATGATGTCAACAAAATTGGC-5′ | |||
| GST-WASP | pFastBac1-GST | F: 5′-GAGCATATGATGGGTAGTCCAACTATTAGTGATCAAG-3′ | |
| R: 3′-TGCTCTAGAATAATCTGACCATTCATCATCGTCATCATCATC-5′ | |||
| GST-WASPVCA | pGEX-6P-1 | F: 5′-CGCGGATCCCCATCATCAGGAGGTGGTGGTGCC-3′ | |
| R: 3′-TGCTCTAGATTAATAATCTGACCATTCATCATCGTCATC-5′ | |||
| GST-Fbp17SH3 | pGEX-6P-1 | F: 5′-CGCGGATCCGCTGGTGCAACTGGTGGTGCCACTAGAG-3′ | |
| R: 3′-CAGGCTCGAGACCATCGATGATGTCAACAAAATTGGC-5′ | |||
| His-MBP-Fbp17SH3 | pET-MBP-3C | F: 5′-CGCGGATCCGCTGGTGCAACTGGTGGTGCCACTAGAG-3′ | |
| R: 3′-CAGGCTCGAGACCATCGATGATGTCAACAAAATTGGC-5′ | |||
| Expression in yeast cells | |||
| Fbp17 | pGADT7 | F: 5′-GAGCATATGATGAGTTATTCAACCGATTTATTAGATGG-3′ | |
| R: 3′-CGCGGATCCACCATCGATGATGTCAACAAAATTGGCCGG-5′ | |||
| WASPN126-230 | pGADT7 | F: 5′-GAGCATATGATTGGTAAAACTGCTGCAATTAATCCAAATAC-3′ | |
| R: 3′-GG AGATCTACCAATGATATTGACAATGAATTGAGCAG-5′ | |||
| Rac1AG12V | pGBKT7 | F: 5′-GTTGCTGTAGGTAAAACCTGTCTTTTAATTTC-3′ | |
| R: 3′-ATCACCGACAACGACACATTTAATTGCTTG-5′ | |||
| Rac1BG12V | pGBKT7 | F: 5′-GTTGCAGTTGGTAAAACATGTCTTTTAATTTC-3′ | |
| R: 3′-ATCACCAACAACTACACATTTAATTGC-5′ | |||
| Rac1CG12V | pGBKT7 | F: 5′-GTTGCGGTTGGTAAAACATGTCTTTTAATTTC-3′ | |
| R: 3′-ATCACCTACAACTACACATTTAATTGC-5′ | |||
| RacAG12V | pGBKT7 | F: 5′-GTTGCTGTAGGTAAAAGTTGTTTATTAATTGC-3′ R: 3′-ATCACCTACTACTACTAATTTAATTGC-5′ | |
| RacBG12V | pGBKT7 | F: 5′-GTTGCTGTTGGTAAAACTTGTTTATTAATTTC-3′ | |
| R: 3′-ATCACCTACTACCACCAATTTAATTGATTG-5′ | |||
| RacCG15V | pGBKT7 | F: 5′-GTTGCTGTAGGTAAAACTTGTTTATTGATTAG-3′ | |
| R: 3′-ATCACCAATAACGACTAATTTAATAACTTC-5′ | |||
| RacDG17V | pGBKT7 | F: 5′-GTTGCTGTTGGTAAAACTTCACTTTTAATTTTATATAC-3′ | |
| R: 3′-ATCACCTACAACTACTACTTTAACAG-5′ | |||
| RacEG20V | pGBKT7 | F: 5′-GTTGCTGTTGGTAAAACATGTCTTTTAATTTG-3′ | |
| R: 3′-ATCACCGACAACTACTAATTTAACTCTTG-5′ | |||
| RacF1G12V | pGBKT7 | F: 5′-GTTGCAGTTGGTAAAACCTGTATGTTAATTTC-3′ | |
| R: 3′-ATCACCAACAACAACACATTTAATATTTTG-5′ | |||
| RacF2G12V | pGBKT7 | F: 5′-GTTGCAGTTGGTAAAACTTGTATGTTAATTTC-3′ | |
| R: 3′-ATCACCAACAACAACACATTTAATATTTTG-5′ | |||
| RacGG12V | pGBKT7 | F: 5′-GTTGGAATTGGTAAAACATCAATGTTATTAAG-3′ | |
| R: 3′-TTCGCCAACAACACAAACTTTAATACTTTTC-5′ | |||
| RacHM13V | pGBKT7 | F: 5′-GTTAGTGTAGGTAAGACATGTTTACTCATTTC-3′ | |
| R: 3′-ATCACCTACAACCATTACTTTAATATCTTTTAC-5′ | |||
| RacIS14V | pGBKT7 | F: 5′-GTTAAAACTGGAAAAACTACAATGATGATGAC-3′ | |
| R: 3′-ATCACCTAATACTAATAACTTTATATATG-5′ | |||
| RacJD18V | pGBKT7 | F: 5′-GTTGGAGTTGGTAAATCATGTGTAATGAACTC-3′ | |
| R: 3′-ATCTCCAAGACAAAATATTTTAAC-5′ | |||
| RacLG12V | pGBKT7 | F: 5′-GTTGCAGTTGGTAAAACAAGTTTATTAATTGC-3′ | |
| R: 3′-ATCACCACAAATTACCATTTTTATATATTGC-5′ | |||
| RacMY14V | pGBKT7 | F: 5′-GTTGGTGTTGGTAAAACCACCCTATTAATGAC-3′ | |
| R: 3′-ATCGCCAATCGTAACTATTTTAATAG-5′ | |||
| RacNG14V | pGBKT7 | F: 5′-TTAGAGGATTATCCTCGTATAAGACCATTATC-3′ | |
| R: 3′-ACCACCAGTATCCCAACAACCAATTCTC-5′ | |||
| RacOG13V | pGBKT7 | F: 5′-GTTTTAATTGGTAAAACTACATTATTAATGAC-3′ | |
| R: 3′-ATCACCAACTGTCACTATCTTTACTTC-5′ | |||
| RacPG58V | pGBKT7 | F: 5′-GTTTACTGTTGGAAAAACAACACTCTTATTATC-3′ | |
| R: 3′-ATCACCTACAACACCACATTTAATAACCTTTG-5′ | |||
| Other plasmids for expression in Dictyostelium cells | |||
| PHcrac-GFP | Peter Devreotes Laboratory, Johns Hopkins University | ||
| LimEΔcoil-GFP | Peter Devreotes Laboratory, Johns Hopkins University | ||
| LimEΔcoil-RFP | Douglas Robinson Laboratory, Johns Hopkins University | ||