Multifunctional LIRs and their non-Atg8–binding partners
| Model | LIR | non-Atg8 partner | Sequence |
| Adjacent | Atg19 (3x) | Atg11 | 371 ASQEPFYSFQIDTLPELDDSSIISTSISLSYDGDDNEKALTWEEL 415 |
| Atg30 | Atg11 | 68 TDNSEWILFSPENA..[24]..YNEDDILSSSRRSSEDVY 123 | |
| Atg32 | Atg11 | 81 SISGSWQAIQPLDL..[12]..TTNGSILSSSDTSEEEQE 124 | |
| Atg36 | Atg11 | 28 DEESLFEVLELSEE..[48]..SDEIAILSISSDSNKNSP 107 | |
| NBR1 | TAX1BP1 | 727 ASSEDYIIILPECFDTSRP 745 | |
| CCPG1 | FIP200 | 9 DSSCGWTVISHEGSDIEMLNSVTP 32 | |
| p62 | KEAP1 | 333 GGDDDWTHLSSKEVDPSTGELQSLQ 357 | |
| Bipartite | BNIP3 | WIPIs | 13 SLQGSWVELHFSNN..[14]..GDMEKILLDAQHESGRSS 58 |
| NIX | WIPIs | 31 GLNSSWVELPMNSS..[24]..GDMEKILLDAQHESGQSS 86 | |
| Hybrid | OPTN | FIP200 | 173 SSEDSFVEIRMAEG 186 |
| p62 | FIP200 | 333 GGDDDWTHLSSKEV 346 | |
| TNIP1 | FIP200 | 120 GTSSEFEVVTPEEQ 133 | |
| NDP52 | FIP200 | 129 NEEDILVVTTQGEV 142 | |
| NAP1 | FIP200 | 4 LVEDDICILNHEKA 17 | |
| STBD1 | FIP200 | 198 VDHEEWEMVPRHSS 211 | |
| BCL2L13 | FIP200 | 271 LGPESWQQIAMDPE 284 | |
| FUNDC1 | FIP200 | 13 SDDDSYEVLDLTEY 26 | |
| CCPG1 | FIP200 | 101 SDDSDIVTLEPPKL 114 | |
| NBR1 | FIP200 | 727 ASSEDYIIILPECF 740 | |
| C53 (4x) | UFM1 (3x) | 269 AAADSIDWDITVETPEIDWDVS..[11]..GSYEIVNA..[21]..SEISWDVSVET 341 | |
| Uba5 | UFM1 | 335 IHEDNEWGIELVSEVSEEELKN 356 | |
| Atg19 (3x) | Atg5 (3x) | 371 ASQEPFYSFQIDTLPELDDSSIISTSISLSYDGDDNEKALTWEEL 415 |
| Model | LIR | non-Atg8 partner | Sequence |
| Adjacent | Atg19 (3x) | Atg11 | 371 ASQEPFYSFQIDTLPELDDSSIISTSISLSYDGDDNEKALTWEEL 415 |
| Atg30 | Atg11 | 68 TDNSEWILFSPENA..[24]..YNEDDILSSSRRSSEDVY 123 | |
| Atg32 | Atg11 | 81 SISGSWQAIQPLDL..[12]..TTNGSILSSSDTSEEEQE 124 | |
| Atg36 | Atg11 | 28 DEESLFEVLELSEE..[48]..SDEIAILSISSDSNKNSP 107 | |
| NBR1 | TAX1BP1 | 727 ASSEDYIIILPECFDTSRP 745 | |
| CCPG1 | FIP200 | 9 DSSCGWTVISHEGSDIEMLNSVTP 32 | |
| p62 | KEAP1 | 333 GGDDDWTHLSSKEVDPSTGELQSLQ 357 | |
| Bipartite | BNIP3 | WIPIs | 13 SLQGSWVELHFSNN..[14]..GDMEKILLDAQHESGRSS 58 |
| NIX | WIPIs | 31 GLNSSWVELPMNSS..[24]..GDMEKILLDAQHESGQSS 86 | |
| Hybrid | OPTN | FIP200 | 173 SSEDSFVEIRMAEG 186 |
| p62 | FIP200 | 333 GGDDDWTHLSSKEV 346 | |
| TNIP1 | FIP200 | 120 GTSSEFEVVTPEEQ 133 | |
| NDP52 | FIP200 | 129 NEEDILVVTTQGEV 142 | |
| NAP1 | FIP200 | 4 LVEDDICILNHEKA 17 | |
| STBD1 | FIP200 | 198 VDHEEWEMVPRHSS 211 | |
| BCL2L13 | FIP200 | 271 LGPESWQQIAMDPE 284 | |
| FUNDC1 | FIP200 | 13 SDDDSYEVLDLTEY 26 | |
| CCPG1 | FIP200 | 101 SDDSDIVTLEPPKL 114 | |
| NBR1 | FIP200 | 727 ASSEDYIIILPECF 740 | |
| C53 (4x) | UFM1 (3x) | 269 AAADSIDWDITVETPEIDWDVS..[11]..GSYEIVNA..[21]..SEISWDVSVET 341 | |
| Uba5 | UFM1 | 335 IHEDNEWGIELVSEVSEEELKN 356 | |
| Atg19 (3x) | Atg5 (3x) | 371 ASQEPFYSFQIDTLPELDDSSIISTSISLSYDGDDNEKALTWEEL 415 |
Multifunctional LIR motif sequences are shown, with the core LIR (underlined), non-Atg8 motifs (bold), and overlapping motifs (underlined and bold) indicated. Only the core LIR residues are marked, although flanking residues often contribute critically to LIR function. Motifs are categorized by how each non-Atg8 motif is integrated with its corresponding LIR—adjacent, bipartite, and hybrid—in order of increasing overlap.