List of 100 CB Proteins identified by Coilin-APEX2 enrichment
| Function . | Proteins enriched in Coilin-APEX2 . |
|---|---|
| Cell cycle progression | ANLN, ANXA11, BUB3, KIF4A, NCAPD3, NUMA1, ZNF207 |
| DNA replication and repair | ATAD2, POLD1, RFC5, RECQL, RIF1, USP7 |
| Transcription | CDC73, ERCC3, FUBP1, GTF2F2, GTF3C5, HTATSF1, IRF2BP1, MED1, MED14, MED17, POLR2C, SMARCA4, SMARCC1, SSRP1, SUPT5H, SUPT6H, UBR5, ELL, ICE1, ICE2, POLR2A, POLR2B |
| Pre-mRNA splicing and cleavage | CLP1, CPSF6, DHX38, IK, KHSRP, NUDT21, PPAN, RBM10, SON, SRRM2, EFTUD2, NHP2L1, PRPF3, PRPF4, SART1, SF3A1, SF3B2, SNRPB, SNRPD1, SNRPD2, SNRPD3, SNRPE, TARDBP |
| snRNA maturation and snRNP assembly | COIL, DDX20, SART3, TGS1, TOE1 |
| rRNA processing and ribosome biogenesis | GAR1, GNL3L, GTPBP4, NSA2, TEX10, DKC1, NOLC1, NOP56, NOP58 |
| Histone mRNA processing | LSM11, NPAT |
| miRNA processing | SRRT |
| RNA helicase | DDX18 |
| RNA exosome | EXOSC2 |
| Ribosomal protein | RPL13, RPL14, RPL15, RPL24, RPL3, RPL34, RPL7A, RPL8, RPS2, RPS24 |
| Other | AP2A2, ATP6V1A, CSNK2A1, CSNK2B, CYB5R1, HIST1H2AJ, NUP54, OXA1L, PPIL4, SFXN3, SLC25A13, SPCS3, PSME3 |
| Function . | Proteins enriched in Coilin-APEX2 . |
|---|---|
| Cell cycle progression | ANLN, ANXA11, BUB3, KIF4A, NCAPD3, NUMA1, ZNF207 |
| DNA replication and repair | ATAD2, POLD1, RFC5, RECQL, RIF1, USP7 |
| Transcription | CDC73, ERCC3, FUBP1, GTF2F2, GTF3C5, HTATSF1, IRF2BP1, MED1, MED14, MED17, POLR2C, SMARCA4, SMARCC1, SSRP1, SUPT5H, SUPT6H, UBR5, ELL, ICE1, ICE2, POLR2A, POLR2B |
| Pre-mRNA splicing and cleavage | CLP1, CPSF6, DHX38, IK, KHSRP, NUDT21, PPAN, RBM10, SON, SRRM2, EFTUD2, NHP2L1, PRPF3, PRPF4, SART1, SF3A1, SF3B2, SNRPB, SNRPD1, SNRPD2, SNRPD3, SNRPE, TARDBP |
| snRNA maturation and snRNP assembly | COIL, DDX20, SART3, TGS1, TOE1 |
| rRNA processing and ribosome biogenesis | GAR1, GNL3L, GTPBP4, NSA2, TEX10, DKC1, NOLC1, NOP56, NOP58 |
| Histone mRNA processing | LSM11, NPAT |
| miRNA processing | SRRT |
| RNA helicase | DDX18 |
| RNA exosome | EXOSC2 |
| Ribosomal protein | RPL13, RPL14, RPL15, RPL24, RPL3, RPL34, RPL7A, RPL8, RPS2, RPS24 |
| Other | AP2A2, ATP6V1A, CSNK2A1, CSNK2B, CYB5R1, HIST1H2AJ, NUP54, OXA1L, PPIL4, SFXN3, SLC25A13, SPCS3, PSME3 |
Statistically enriched proteins identified in the Coilin-APEX2 dataset relative to ΔNTD-APEX2 and relative to APEX2-NLS. Proteins are identified by their Gene ID, and Gene IDs in bold represent previously known CB components.