Scientific image data repositories for cell and developmental biology
| Resource | Description | Reference |
| Allen Brain Atlas | Mouse brain gene expression patterns | http://www.brain-map.org; Lein et al., 2007 |
| Edinburgh Mouse Atlas of Gene Expression | Developmental atlas of mouse gene expression, including image data submitted by the community | http://genex.hgu.mrc.ac.uk/emage/home.php; Christiansen et al., 2006 |
| Fly-FISH | mRNA localization in Drosophila embryo | http://fly-fish.ccbr.utoronto.ca; Lécuyer et al., 2007 |
| BDGP In Situ Database | Gene expression patterns during Drosophila development | http://www.fruitfly.org/cgi-bin/ex/insitu.pl |
| Zebrafish Model Organism Database | Gene expression patterns during zebrafish development | http://zfin.org; Sprague et al., 2006 |
| 4DXpress | Cross-species gene express pattern comparison | http://4dx.embl.de/4DXpress; Haudry et al., 2008 |
| Subcellular Localization Resource SLIF and PSLID | Web-based resources for the computational determination and mining of subcellular localization | Qian and Murphy, 2008 |
| National Center for Research Resources Yeast Resource Center | Image datasets mapping subcellular localization in S. cerevisiae | http://depts.washington.edu/yeastrc/; Riffle et al., 2005 |
| MitoCheck | Genome-wide siRNA screen of mitotic phenotypes in HeLa cells | http://www.mitocheck.org; Neumann et al., 2010 |
| PhenoBank Database | Genome-wide C. elegans screen for functional roles in early embryonic mitotic divisions | http://worm.mpi-cbg.de/phenobank2/; Sönnichsen et al., 2005 |
| American Society for Cell Biology Image & Video Librarya | Scientific image and video archive | http://cellimages.ascb.org/ |
| Bisque Database | Image data management system; provides powerful web interface and integrates several commonly used image analysis functions | http://www.bioimage.ucsb.edu/bisque; Kvilekval et al., 2010 |
| Cell Centered Database | Annotated images of cells using ontologies that specifically define the anatomy of cells and tissues | http://ccdb.ucsd.edu/; Martone et al., 2008 |
| JCB DataViewer | Original image data viewed through browser-based interface linked to publications in JCB | https://rupress.org/jcb/pages/jcb-dataviewer; Hill, 2008 |
| Optical Society of America Interactive Science Publishing | Downloadable image data available for user viewing and rendering using downloadable software | http://www.opticsinfobase.org/isp.cfm |
| Resource | Description | Reference |
| Allen Brain Atlas | Mouse brain gene expression patterns | http://www.brain-map.org; Lein et al., 2007 |
| Edinburgh Mouse Atlas of Gene Expression | Developmental atlas of mouse gene expression, including image data submitted by the community | http://genex.hgu.mrc.ac.uk/emage/home.php; Christiansen et al., 2006 |
| Fly-FISH | mRNA localization in Drosophila embryo | http://fly-fish.ccbr.utoronto.ca; Lécuyer et al., 2007 |
| BDGP In Situ Database | Gene expression patterns during Drosophila development | http://www.fruitfly.org/cgi-bin/ex/insitu.pl |
| Zebrafish Model Organism Database | Gene expression patterns during zebrafish development | http://zfin.org; Sprague et al., 2006 |
| 4DXpress | Cross-species gene express pattern comparison | http://4dx.embl.de/4DXpress; Haudry et al., 2008 |
| Subcellular Localization Resource SLIF and PSLID | Web-based resources for the computational determination and mining of subcellular localization | Qian and Murphy, 2008 |
| National Center for Research Resources Yeast Resource Center | Image datasets mapping subcellular localization in S. cerevisiae | http://depts.washington.edu/yeastrc/; Riffle et al., 2005 |
| MitoCheck | Genome-wide siRNA screen of mitotic phenotypes in HeLa cells | http://www.mitocheck.org; Neumann et al., 2010 |
| PhenoBank Database | Genome-wide C. elegans screen for functional roles in early embryonic mitotic divisions | http://worm.mpi-cbg.de/phenobank2/; Sönnichsen et al., 2005 |
| American Society for Cell Biology Image & Video Librarya | Scientific image and video archive | http://cellimages.ascb.org/ |
| Bisque Database | Image data management system; provides powerful web interface and integrates several commonly used image analysis functions | http://www.bioimage.ucsb.edu/bisque; Kvilekval et al., 2010 |
| Cell Centered Database | Annotated images of cells using ontologies that specifically define the anatomy of cells and tissues | http://ccdb.ucsd.edu/; Martone et al., 2008 |
| JCB DataViewer | Original image data viewed through browser-based interface linked to publications in JCB | https://rupress.org/jcb/pages/jcb-dataviewer; Hill, 2008 |
| Optical Society of America Interactive Science Publishing | Downloadable image data available for user viewing and rendering using downloadable software | http://www.opticsinfobase.org/isp.cfm |
SLIF, Subcellular Location Image Finder; PSLID, Protein Subcellular Location Image Database.
In development as of 2010.