Table I.

ORFs in diverse eukaryotes that possess conserved nuclear membrane protein domains

Species SUN domain (PF07738) LUMA (DUF1625) LEM domain (PF03020) KASH (PF10541) Nurim 
Homo sapiens NP_001165415, NP_079430, NP_001186508, NP_056189, NP_689995, NP_542406, NP_003107 NP_077310 NP_001161086, NP_055134, NP_001001552, NP_001185979, NP_851853, NP_055929 NP_892006, NP_149062, NP_878914, NP_689805, NP_878918, NP_055995, NP_878917NP_009174 
Drosophila melanogaster NP_610240, ABQ08586 NP_648162 ABY20424, NP_609281, NP_610099 NP_001188695, AAO42670, NP_001188694, NP_001188696, AAN60444, NP_001188697, AAM11072, AAN35199, NP_001097463, NP_001097462, NP_001036576, NP_523873 NP_650646 
Caenorhabditis elegans NP_001024707, NP_506281  NP_490907, NP_496944, NP_492539 NP_491353  
Nematostella vectensis XP_001632145 XP_001622563, XP_001626986 XP_001638261   
Monosiga brevicollis XP_001747062     
Capsaspora owczarzaki EFW43369 EFW40407   EFW41164 
Saccharomyces cerevisiae NP_012515     
Neurospora crassa 
Schizosaccharomyces pombe NP_595947     
Dictyostelium discoideum XP_644924    XP_636885 
Entamoeba histolytica 
Arabidopsis thaliana NP_196118, NP_566380     
Chlamydomonas reinhardtii 
Thallasiosira pseudonana XP_002288849 XP_002296785    
Phytophthora ramorum XP_002997929     
Paramecium tetraurelia  XP_001461995, XP_001425037, XP_001441689, XP_001453417, XP_001444222, XP_001425204, XP_001428586, XP_001425039    
Plasmodium falciparum XP_001350555     
Trypanosoma brucei 
Naegleria gruberi XP_002675222 XP_002683403    
Trichomonas vaginalis 
Giardia intestinalis EES98800     
Species SUN domain (PF07738) LUMA (DUF1625) LEM domain (PF03020) KASH (PF10541) Nurim 
Homo sapiens NP_001165415, NP_079430, NP_001186508, NP_056189, NP_689995, NP_542406, NP_003107 NP_077310 NP_001161086, NP_055134, NP_001001552, NP_001185979, NP_851853, NP_055929 NP_892006, NP_149062, NP_878914, NP_689805, NP_878918, NP_055995, NP_878917NP_009174 
Drosophila melanogaster NP_610240, ABQ08586 NP_648162 ABY20424, NP_609281, NP_610099 NP_001188695, AAO42670, NP_001188694, NP_001188696, AAN60444, NP_001188697, AAM11072, AAN35199, NP_001097463, NP_001097462, NP_001036576, NP_523873 NP_650646 
Caenorhabditis elegans NP_001024707, NP_506281  NP_490907, NP_496944, NP_492539 NP_491353  
Nematostella vectensis XP_001632145 XP_001622563, XP_001626986 XP_001638261   
Monosiga brevicollis XP_001747062     
Capsaspora owczarzaki EFW43369 EFW40407   EFW41164 
Saccharomyces cerevisiae NP_012515     
Neurospora crassa 
Schizosaccharomyces pombe NP_595947     
Dictyostelium discoideum XP_644924    XP_636885 
Entamoeba histolytica 
Arabidopsis thaliana NP_196118, NP_566380     
Chlamydomonas reinhardtii 
Thallasiosira pseudonana XP_002288849 XP_002296785    
Phytophthora ramorum XP_002997929     
Paramecium tetraurelia  XP_001461995, XP_001425037, XP_001441689, XP_001453417, XP_001444222, XP_001425204, XP_001428586, XP_001425039    
Plasmodium falciparum XP_001350555     
Trypanosoma brucei 
Naegleria gruberi XP_002675222 XP_002683403    
Trichomonas vaginalis 
Giardia intestinalis EES98800     

Search results for selected nuclear protein ORFs in representatives of five eukaryotic supergroup lineages, listing genes or ORFs homologous to each queried polypeptide that were detected in completed genomes of representative supergroup lineages (Opisthokonts, Amoebozoa, Archaeplastida, Chromalveolates, and Excavates) in GenBank using reciprocal BLAST with e-values > 0.01. This method detected ORFs representing four of the seven known human LEM domain genes, and is therefore quite stringent. Multiple ORFs, for example LUMA-related ORFs in Paramecium, were not annotated so the number of encoding gene(s) remains to be determined.

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