Three-channel imaging and detection of indicated molecule combinations
| . | Channel wavelength . | PSF sigma (pixels, nm) . | Parameters . |
|---|---|---|---|
| TfR/TSAd/CHC | |||
| TfR | 561 | 1.4, 113 | Alpha: 0.01, all others: default |
| TSAd | 488 | 1.2, 97 | Alpha: 0.01, all others: default |
| CHC | 640 | 1.58, 128 | Alpha: 0.05, all others: default |
| Activated β1-integrin/pFAK/paxillin | |||
| Activated β1-integrin | 561 | 1.4, 113 | Alpha: 0.01, all others: default |
| pFAK | 488 | 1.2, 97 | Alpha: 0.01, all others: default |
| Paxillin | 640 | N/A | N/A |
| VEGFR-2/TSAd/CHC | |||
| VEGFR-2 | 561 | 1.4, 113 | Alpha: 0.05, all others: default |
| TSAd | 488 | 1.2, 97 | Alpha: 0.01, all others: default |
| CHC | 640 | 1.58, 128 | Alpha: 0.05, all others: default |
| VEGFR-2/TSAd/paxillin | |||
| VEGFR-2 | 561 | 1.4, 113 | Alpha: 0.05, all others: default |
| TSAd | 488 | 1.2, 97 | Alpha: 0.01, all others: default |
| Paxillin | 640 | N/A | N/A |
| . | Channel wavelength . | PSF sigma (pixels, nm) . | Parameters . |
|---|---|---|---|
| TfR/TSAd/CHC | |||
| TfR | 561 | 1.4, 113 | Alpha: 0.01, all others: default |
| TSAd | 488 | 1.2, 97 | Alpha: 0.01, all others: default |
| CHC | 640 | 1.58, 128 | Alpha: 0.05, all others: default |
| Activated β1-integrin/pFAK/paxillin | |||
| Activated β1-integrin | 561 | 1.4, 113 | Alpha: 0.01, all others: default |
| pFAK | 488 | 1.2, 97 | Alpha: 0.01, all others: default |
| Paxillin | 640 | N/A | N/A |
| VEGFR-2/TSAd/CHC | |||
| VEGFR-2 | 561 | 1.4, 113 | Alpha: 0.05, all others: default |
| TSAd | 488 | 1.2, 97 | Alpha: 0.01, all others: default |
| CHC | 640 | 1.58, 128 | Alpha: 0.05, all others: default |
| VEGFR-2/TSAd/paxillin | |||
| VEGFR-2 | 561 | 1.4, 113 | Alpha: 0.05, all others: default |
| TSAd | 488 | 1.2, 97 | Alpha: 0.01, all others: default |
| Paxillin | 640 | N/A | N/A |
PSF, point spread function. Shown are the parameters of the “point-source detection” particle detection algorithm in u-track that vary between channels and datasets. Two other parameters that change (namely “Max Fit Adjust” and “Fit Window Size”) are not shown because they were given their default values of 2 × PSF sigma and 4 × PSF sigma, respectively. The paxillin channel has N/A parameters because it was not detected using point-source detection due to its non-punctate nature.