Table 3.

Binding energies estimated with MM/PBSA

CNB domain Eapolar Epolar Etot 
 kcal/mol kcal/mol kcal/mol 
Wild type −49.1 ± 0.3 −2.8 ± 0.3 −51.9 ± 0.4 
Mutant −47.1 ± 0.4 −6.4 ± 0.3 −53.4 ± 0.4 
ΔG(mutant)-ΔG(wild-type) 2.0 ± 0.7 −3.6 ± 0.6 −1.5 ± 0.8 
CNB domain Eapolar Epolar Etot 
 kcal/mol kcal/mol kcal/mol 
Wild type −49.1 ± 0.3 −2.8 ± 0.3 −51.9 ± 0.4 
Mutant −47.1 ± 0.4 −6.4 ± 0.3 −53.4 ± 0.4 
ΔG(mutant)-ΔG(wild-type) 2.0 ± 0.7 −3.6 ± 0.6 −1.5 ± 0.8 

Binding energies are reported as average values ± standard errors calculated over 100 samples (100-ns MD trajectories sampled with a period equal to 1 ns). The total binding energy (Etot) is the sum of an apolar term (Eapolar; equal to the Van der Waals energy plus the apolar contribution to the solvation energy) and a polar term (Epolar; equal to the coulombic energy plus the polar contribution to the solvation energy).

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