Table 3.
List of publically available datasets used in this study
GEO datasetFirst authorConditionsStudy typeGEO linkPublication link
GSE68376 Bruttger Microglia versus CNS engrafting bone marrow–derived macrophages (beMφs) RNA sequencing http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE68376 http://www.ncbi.nlm.nih.gov/pubmed/26163371 
GSE15907 ImmGen Microglia versus peripheral immune cells for signature validation Affymetrix Array http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15907 Multiple, see citations on GEO page 
GSE63340 Lavin Comparison of microglia to peripheral macrophages/monocytes for generation of signatures RNA sequencing http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63340 http://www.ncbi.nlm.nih.gov/pubmed/25480296 
GSE75246 Srinivasan LPS-treated and control neurons/astrocytes/microglia RNA sequencing https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE75246 https://www.ncbi.nlm.nih.gov/pubmed/27097852 
GSE99078 Takata iMac versus BM Mac RNA sequencing https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE99078 https://www.ncbi.nlm.nih.gov/pubmed/28723550 
GEO datasetFirst authorConditionsStudy typeGEO linkPublication link
GSE68376 Bruttger Microglia versus CNS engrafting bone marrow–derived macrophages (beMφs) RNA sequencing http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE68376 http://www.ncbi.nlm.nih.gov/pubmed/26163371 
GSE15907 ImmGen Microglia versus peripheral immune cells for signature validation Affymetrix Array http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE15907 Multiple, see citations on GEO page 
GSE63340 Lavin Comparison of microglia to peripheral macrophages/monocytes for generation of signatures RNA sequencing http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE63340 http://www.ncbi.nlm.nih.gov/pubmed/25480296 
GSE75246 Srinivasan LPS-treated and control neurons/astrocytes/microglia RNA sequencing https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE75246 https://www.ncbi.nlm.nih.gov/pubmed/27097852 
GSE99078 Takata iMac versus BM Mac RNA sequencing https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE99078 https://www.ncbi.nlm.nih.gov/pubmed/28723550 

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