Table 1.
List of genes in the Mg-52 signature
SymbolEnsemblEntrezName
Abhd6 ENSMUSG00000025277 66082 Abhydrolase domain containing 6 
Adamts1 ENSMUSG00000022893 11504 A disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1 
Adgrg1 ENSMUSG00000031785 14766 Adhesion G protein–coupled receptor G1 
Adora3 ENSMUSG00000000562 11542 Adenosine A3 receptor 
Arhgap5 ENSMUSG00000035133 11855 Rho GTPase-activating protein 5 
Atp2c1 ENSMUSG00000032570 235574 ATPase, Ca2+ sequestering 
Atp6v0a2 ENSMUSG00000038023 21871 ATPase, H+ transporting, lysosomal V0 subunit A2 
Atp8a2 ENSMUSG00000021983 50769 ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 
Bin1 ENSMUSG00000024381 30948 Bridging integrator 1 
Capn3 ENSMUSG00000079110 12335 Calpain 3 
Cd34 ENSMUSG00000016494 12490 CD34 antigen 
Cd81 ENSMUSG00000037706 12520 CD81 antigen 
Col27a1 ENSMUSG00000045672 373864 Collagen, type XXVII, alpha 1 
Commd8 ENSMUSG00000029213 27784 COMM domain containing 8 
Cst3 ENSMUSG00000027447 13010 Cystatin C 
Ctsl ENSMUSG00000021477 13039 Cathepsin L 
Daglb ENSMUSG00000039206 231871 Diacylglycerol lipase, beta 
Ecscr ENSMUSG00000073599 68545 Endothelial cell surface–expressed chemotaxis and apoptosis regulator 
Entpd1 ENSMUSG00000048120 12495 Ectonucleoside triphosphate diphosphohydrolase 1 
Erf ENSMUSG00000040857 13875 Ets2 repressor factor 
Fchsd2 ENSMUSG00000030691 207278 FCH and double SH3 domains 2 
Fscn1 ENSMUSG00000029581 14086 Fascin actin-bundling protein 1 
Gcnt1 ENSMUSG00000038843 14537 Glucosaminyl (N-acetyl) transferase 1, core 2 
Hexb ENSMUSG00000021665 15212 Hexosaminidase B 
Il6st ENSMUSG00000021756 16195 Interleukin 6 signal transducer 
Kcnd1 ENSMUSG00000009731 16506 Potassium voltage-gated channel, Shal-related family, member 1 
Kcnk6 ENSMUSG00000046410 52150 Potassium inwardly rectifying channel, subfamily K, member 6 
Ldhb ENSMUSG00000030246 16832 Lactate dehydrogenase B 
Lpcat3 ENSMUSG00000004270 14792 Lysophosphatidylcholine acyltransferase 3 
Med12l ENSMUSG00000056476 329650 Mediator complex subunit 12-like 
Numb ENSMUSG00000021224 18222 Numb homologue (Drosophila) 
P2ry12 ENSMUSG00000036353 70839 Purinergic receptor P2Y, G-protein–coupled 12 
Pag1 ENSMUSG00000027508 94212 Phosphoprotein associated with glycosphingolipid microdomains 1 
Pde3b ENSMUSG00000030671 18576 Phosphodiesterase 3B, cGMP inhibited 
Prkca ENSMUSG00000050965 18750 Protein kinase C, alpha 
Prpsap2 ENSMUSG00000020528 212627 Phosphoribosyl pyrophosphate synthetase-associated protein 2 
Rhoh ENSMUSG00000029204 74734 Ras homologue family member H 
Rilpl1 ENSMUSG00000029392 75695 Rab interacting lysosomal protein-like 1 
Rtn4rl1 ENSMUSG00000045287 237847 Reticulon 4 receptor-like 1 
Sall1 ENSMUSG00000031665 58198 Sal-like 1 (Drosophila) 
Sall3 ENSMUSG00000024565 20689 Sal-like 3 (Drosophila) 
Serpine2 ENSMUSG00000026249 20720 Serine (or cysteine) peptidase inhibitor, clade E, member 2 
Sgce ENSMUSG00000004631 20392 Sarcoglycan, epsilon 
Slc2a5 ENSMUSG00000028976 56485 Solute carrier family 2 (facilitated glucose transporter), member 5 
Snx17 ENSMUSG00000029146 266781 Sorting nexin 17 
Sparc ENSMUSG00000018593 20692 Secreted acidic cysteine rich glycoprotein 
Stard3 ENSMUSG00000018167 59045 START domain containing 3 
Syngr1 ENSMUSG00000022415 20972 Synaptogyrin 1 
Tgfa ENSMUSG00000029999 21802 Transforming growth factor alpha 
Tmem119 ENSMUSG00000054675 231633 Transmembrane protein 119 
Tmem204 ENSMUSG00000024168 407831 Transmembrane protein 204 
Zbtb18 ENSMUSG00000063659 30928 Zinc-finger and BTB domain containing 18 
SymbolEnsemblEntrezName
Abhd6 ENSMUSG00000025277 66082 Abhydrolase domain containing 6 
Adamts1 ENSMUSG00000022893 11504 A disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 1 
Adgrg1 ENSMUSG00000031785 14766 Adhesion G protein–coupled receptor G1 
Adora3 ENSMUSG00000000562 11542 Adenosine A3 receptor 
Arhgap5 ENSMUSG00000035133 11855 Rho GTPase-activating protein 5 
Atp2c1 ENSMUSG00000032570 235574 ATPase, Ca2+ sequestering 
Atp6v0a2 ENSMUSG00000038023 21871 ATPase, H+ transporting, lysosomal V0 subunit A2 
Atp8a2 ENSMUSG00000021983 50769 ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 
Bin1 ENSMUSG00000024381 30948 Bridging integrator 1 
Capn3 ENSMUSG00000079110 12335 Calpain 3 
Cd34 ENSMUSG00000016494 12490 CD34 antigen 
Cd81 ENSMUSG00000037706 12520 CD81 antigen 
Col27a1 ENSMUSG00000045672 373864 Collagen, type XXVII, alpha 1 
Commd8 ENSMUSG00000029213 27784 COMM domain containing 8 
Cst3 ENSMUSG00000027447 13010 Cystatin C 
Ctsl ENSMUSG00000021477 13039 Cathepsin L 
Daglb ENSMUSG00000039206 231871 Diacylglycerol lipase, beta 
Ecscr ENSMUSG00000073599 68545 Endothelial cell surface–expressed chemotaxis and apoptosis regulator 
Entpd1 ENSMUSG00000048120 12495 Ectonucleoside triphosphate diphosphohydrolase 1 
Erf ENSMUSG00000040857 13875 Ets2 repressor factor 
Fchsd2 ENSMUSG00000030691 207278 FCH and double SH3 domains 2 
Fscn1 ENSMUSG00000029581 14086 Fascin actin-bundling protein 1 
Gcnt1 ENSMUSG00000038843 14537 Glucosaminyl (N-acetyl) transferase 1, core 2 
Hexb ENSMUSG00000021665 15212 Hexosaminidase B 
Il6st ENSMUSG00000021756 16195 Interleukin 6 signal transducer 
Kcnd1 ENSMUSG00000009731 16506 Potassium voltage-gated channel, Shal-related family, member 1 
Kcnk6 ENSMUSG00000046410 52150 Potassium inwardly rectifying channel, subfamily K, member 6 
Ldhb ENSMUSG00000030246 16832 Lactate dehydrogenase B 
Lpcat3 ENSMUSG00000004270 14792 Lysophosphatidylcholine acyltransferase 3 
Med12l ENSMUSG00000056476 329650 Mediator complex subunit 12-like 
Numb ENSMUSG00000021224 18222 Numb homologue (Drosophila) 
P2ry12 ENSMUSG00000036353 70839 Purinergic receptor P2Y, G-protein–coupled 12 
Pag1 ENSMUSG00000027508 94212 Phosphoprotein associated with glycosphingolipid microdomains 1 
Pde3b ENSMUSG00000030671 18576 Phosphodiesterase 3B, cGMP inhibited 
Prkca ENSMUSG00000050965 18750 Protein kinase C, alpha 
Prpsap2 ENSMUSG00000020528 212627 Phosphoribosyl pyrophosphate synthetase-associated protein 2 
Rhoh ENSMUSG00000029204 74734 Ras homologue family member H 
Rilpl1 ENSMUSG00000029392 75695 Rab interacting lysosomal protein-like 1 
Rtn4rl1 ENSMUSG00000045287 237847 Reticulon 4 receptor-like 1 
Sall1 ENSMUSG00000031665 58198 Sal-like 1 (Drosophila) 
Sall3 ENSMUSG00000024565 20689 Sal-like 3 (Drosophila) 
Serpine2 ENSMUSG00000026249 20720 Serine (or cysteine) peptidase inhibitor, clade E, member 2 
Sgce ENSMUSG00000004631 20392 Sarcoglycan, epsilon 
Slc2a5 ENSMUSG00000028976 56485 Solute carrier family 2 (facilitated glucose transporter), member 5 
Snx17 ENSMUSG00000029146 266781 Sorting nexin 17 
Sparc ENSMUSG00000018593 20692 Secreted acidic cysteine rich glycoprotein 
Stard3 ENSMUSG00000018167 59045 START domain containing 3 
Syngr1 ENSMUSG00000022415 20972 Synaptogyrin 1 
Tgfa ENSMUSG00000029999 21802 Transforming growth factor alpha 
Tmem119 ENSMUSG00000054675 231633 Transmembrane protein 119 
Tmem204 ENSMUSG00000024168 407831 Transmembrane protein 204 
Zbtb18 ENSMUSG00000063659 30928 Zinc-finger and BTB domain containing 18 

List of the 52 up-regulated genes identified to distinguish microglia from beMφ via the approach outlined in Fig. 5 A.

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