Table 2.
Enriched gene sets within up-regulated in Nifedipine-treated HSCs, as compared to HSCs cultured under control conditions
Gene set nameSystematic nameNESP valueQ value
HALLMARK_P53_PATHWAY M5939 2.00  <0.01 0.019 
HALLMARK_INFLAMMATORY_RESPONSE M5932 1.98  <0.01 0.019 
HALLMARK_APOPTOSIS M5902 1.90  <0.01 0.027 
HALLMARK_HYPOXIA M5891 1.86  <0.01 0.025 
HALLMARK_IL2_STAT5_SIGNALING M5947 1.83  <0.01 0.028 
HALLMARK_KRAS_SIGNALING_UP M5953 1.82  <0.01 0.026 
HALLMARK_UV_RESPONSE_DN M5942 1.80  <0.01 0.025 
HALLMARK_INTERFERON_ALPHA_RESPONSE M5911 1.78  <0.01 0.025 
HALLMARK_INTERFERON_GAMMA_RESPONSE M5913 1.76  <0.01 0.024 
HALLMARK_NOTCH_SIGNALING M5903 1.72  <0.01 0.029 
HALLMARK_IL6_JAK_STAT3_SIGNALING M5897 1.72  <0.01 0.028 
HALLMARK_MYOGENESIS M5909 1.58  <0.01 0.044 
HALLMARK_HEME_METABOLISM M5945 1.55  <0.01 0.054 
HALLMARK_TNFA_SIGNALING_VIA_NFKB M5890 1.54  <0.01 0.053 
HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION M5930 1.51  <0.01 0.062 
HALLMARK_APICAL_SURFACE M5916 1.40  0.042 0.098 
HALLMARK_ESTROGEN_RESPONSE_LATE M5907 1.38  0.05 0.106 
Gene set nameSystematic nameNESP valueQ value
HALLMARK_P53_PATHWAY M5939 2.00  <0.01 0.019 
HALLMARK_INFLAMMATORY_RESPONSE M5932 1.98  <0.01 0.019 
HALLMARK_APOPTOSIS M5902 1.90  <0.01 0.027 
HALLMARK_HYPOXIA M5891 1.86  <0.01 0.025 
HALLMARK_IL2_STAT5_SIGNALING M5947 1.83  <0.01 0.028 
HALLMARK_KRAS_SIGNALING_UP M5953 1.82  <0.01 0.026 
HALLMARK_UV_RESPONSE_DN M5942 1.80  <0.01 0.025 
HALLMARK_INTERFERON_ALPHA_RESPONSE M5911 1.78  <0.01 0.025 
HALLMARK_INTERFERON_GAMMA_RESPONSE M5913 1.76  <0.01 0.024 
HALLMARK_NOTCH_SIGNALING M5903 1.72  <0.01 0.029 
HALLMARK_IL6_JAK_STAT3_SIGNALING M5897 1.72  <0.01 0.028 
HALLMARK_MYOGENESIS M5909 1.58  <0.01 0.044 
HALLMARK_HEME_METABOLISM M5945 1.55  <0.01 0.054 
HALLMARK_TNFA_SIGNALING_VIA_NFKB M5890 1.54  <0.01 0.053 
HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION M5930 1.51  <0.01 0.062 
HALLMARK_APICAL_SURFACE M5916 1.40  0.042 0.098 
HALLMARK_ESTROGEN_RESPONSE_LATE M5907 1.38  0.05 0.106 

The transcriptome data of three-cell-divided HSCs cultured with or without Nifedipine were subjected to GSEA, and the threshold was set at P value < 0.05. The normalized enrichment score (NES) reflects the degree to which a gene set is overrepresented at the top or bottom of a ranked list of genes. Bold indicates the gene sets in which q < 0.05.

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