Table 2.

Canonical pathway enrichment of shared genes

Gene set name No. genes in gene set (K) No. genes in overlap (k) k/K P-value 
TCA cycle and respiratory electron transport 141 28 0.1986 6.66 × 10− 33 
VIF mediated degradation of apobec3g 52 16 0.3077 1.04 × 10−22 
Class I MHC mediated antigen processing presentation 251 25 0.0996 9.39 × 10−22 
Antigen processing ubiquitination proteasome degradation 212 23 0.1085 5.87 × 10−21 
Proteasome 48 14 0.2917 1.18 × 10−19 
ER phagosome pathway 61 14 0.2295 5.09 × 10−18 
Cell cycle mitotic 325 24 0.0738 6.79 × 10−18 
Cell cycle 421 26 0.0618 2.22 × 10−17 
Antigen processing cross presentation 76 14 0.1842 1.42 × 10−16 
Cross presentation of soluble exogenous antigens endosomes 48 12 0.25 4.02 × 10−16 
Metabolism of mRNA 284 20 0.0704 1.00 × 10−14 
Regulation of_mRNA stability by proteins that bind au rich elements 84 13 0.1548 1.90 × 10−14 
Gene set name No. genes in gene set (K) No. genes in overlap (k) k/K P-value 
TCA cycle and respiratory electron transport 141 28 0.1986 6.66 × 10− 33 
VIF mediated degradation of apobec3g 52 16 0.3077 1.04 × 10−22 
Class I MHC mediated antigen processing presentation 251 25 0.0996 9.39 × 10−22 
Antigen processing ubiquitination proteasome degradation 212 23 0.1085 5.87 × 10−21 
Proteasome 48 14 0.2917 1.18 × 10−19 
ER phagosome pathway 61 14 0.2295 5.09 × 10−18 
Cell cycle mitotic 325 24 0.0738 6.79 × 10−18 
Cell cycle 421 26 0.0618 2.22 × 10−17 
Antigen processing cross presentation 76 14 0.1842 1.42 × 10−16 
Cross presentation of soluble exogenous antigens endosomes 48 12 0.25 4.02 × 10−16 
Metabolism of mRNA 284 20 0.0704 1.00 × 10−14 
Regulation of_mRNA stability by proteins that bind au rich elements 84 13 0.1548 1.90 × 10−14 

Enrichment (evaluated by hypergeometric test) of annotated canonical pathways among the genes that are shared between mouse module (Mm)1 and Human module (Hu)2 and which are enriched in the mouse CD8α+CD103+ cross-presenting DCs and human LCs, respectively. The list of these annotated genes (311) is provided in Table S3 and the pathways are annotated by REACTOME.

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