Table 1.

X-ray crystallography data collection and refinement statistics

Data collection I (752-753, VV) II (981-982, CpG) 
Spacegroup P61 P61 
Unit cell (a, b, c) (Å) 79.12, 79.12, 224.04 77.92, 77.92, 224.39 
(α, β, γ) (°) 90, 90, 120 90, 90, 120 
Wavelength (Å) 1.00 1.00 
Resolution (last shell) (Å) 50–2.80 (2.85–2.80) 50–3.10 (3.15–3.10) 
No of reflections (total/unique) 154198/19330 138765/13817 
Completeness (last shell) (%) 99.4 (96.6)a 99.0 (85.6)a 
I/s(I) (last shell) 14.49 (1.97)a 16.10 (1.97)a 
Rmerge (last shell) (%)b 10.7 (60.7)a 14.0 (65.3)a 
Refinement   
Number of protein atoms 3,267 3274 
No. of DNA base pairs 22 22 
No. of solvent/hetero-atoms 75 61 
Rmsd bond lengths (Å) 0.007 0.008 
Rmsd bond angles (°) 0.982 0.975 
Rwork (%)c 19.6 19.1 
Rfree (%)d 23.8 23.1 
Ramachandran plot favored/disallowed (%)e 95.7/0 95.7/0 
PDB accession code 3S59 3S58 
Data collection I (752-753, VV) II (981-982, CpG) 
Spacegroup P61 P61 
Unit cell (a, b, c) (Å) 79.12, 79.12, 224.04 77.92, 77.92, 224.39 
(α, β, γ) (°) 90, 90, 120 90, 90, 120 
Wavelength (Å) 1.00 1.00 
Resolution (last shell) (Å) 50–2.80 (2.85–2.80) 50–3.10 (3.15–3.10) 
No of reflections (total/unique) 154198/19330 138765/13817 
Completeness (last shell) (%) 99.4 (96.6)a 99.0 (85.6)a 
I/s(I) (last shell) 14.49 (1.97)a 16.10 (1.97)a 
Rmerge (last shell) (%)b 10.7 (60.7)a 14.0 (65.3)a 
Refinement   
Number of protein atoms 3,267 3274 
No. of DNA base pairs 22 22 
No. of solvent/hetero-atoms 75 61 
Rmsd bond lengths (Å) 0.007 0.008 
Rmsd bond angles (°) 0.982 0.975 
Rwork (%)c 19.6 19.1 
Rfree (%)d 23.8 23.1 
Ramachandran plot favored/disallowed (%)e 95.7/0 95.7/0 
PDB accession code 3S59 3S58 
a

Asterisked numbers correspond to the last resolution shell.

b

Rmerge = ∑hi |Ii(h) -<I(h)> | / ∑hi Ii(h), where Ii(h) and <I(h)> are the ith and mean measurement of the intensity of reflection h.

c

Rwork = ∑h||Fobs (h)|-|Fcalc (h)|| / ∑h|Fobs (h)|, where Fobs (h) and F calc (h) are the observed and calculated structure factors, respectively. No I/⌠ cutoff was applied.

d

Rfree is the R value obtained for a test set of reflections consisting of a randomly selected 5% subset of the data set excluded from refinement.

e

Values from Molprobity server (http://molprobity.biochem.duke.edu/).

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