Table 1.

Most up- and down-regulated genes upon blockade of IL-1R signal in RAS-keratinocytes

GenBank accession no. Symbol Ratio IL-1Ra/control P-value 
NM_021480 Tdh 5.79 P < 0.01 
NM_001008706 Calm5 5.74 P < 0.01 
NM_010660 Krt10 5.25 P < 0.01 
NM_008473 Krt1 5.08 P < 0.01 
NM_183136 Spink8 4.91 P < 0.01 
NM_031378 Gsdmc 4.09 P < 0.01 
NM_025416 Them5 4.08 P < 0.01 
NM_030703 Cpn1 3.93 P < 0.01 
NM_027548 Serpinb7 3.78 P < 0.01 
AY027660 Hrnr 3.53 P < 0.01 
NM_010079 Dsg1a 3.42 P < 0.01 
NM_177129 Cntn2 3.32 P < 0.01 
NM_023383 Aadac 3.08 P < 0.01 
NM_010203 Fgf5 3.06 P < 0.01 
NM_144936 Tmem45b 3.04 P < 0.05 
NM_020519 Slurp1 3.04 P < 0.01 
AY027660 Hrnr 2.91 P < 0.01 
NM_027416 Calml3 2.91 P < 0.01 
NM_007574 C1qc 2.89 P < 0.05 
NM_172806.2 Btbd7 2.81 P < 0.05 
NM_178924 Upk1b 2.72 P < 0.05 
NM_008524 Lum 2.68 P < 0.01 
NM_027286 Ace2 2.65 P < 0.01 
NM_028882 Sema3d 2.61 P < 0.01 
NM_033648 Fxyd4 2.61 P < 0.01 
NM_008190 Guca2a 2.52 P < 0.01 
NM_007717 Cmah 2.52 P < 0.01 
BC030317 Lrrc17 2.51 P < 0.01 
NM_008360 Il18 2.51 P < 0.01 
NM_018830 Asah2 2.50 P < 0.05 
NM_178381 Ano9 2.49 P < 0.01 
NM_010554 Il1a 0.35 P < 0.01 
NM_010809 Mmp3 0.34 P < 0.01 
NM_021274 Cxcl10 0.34 P < 0.01 
NM_007621 Cbr2 0.33 P < 0.01 
NM_013519 Foxc2 0.33 P < 0.01 
NM_007778 Csf1 0.32 P < 0.01 
NM_013599 Mmp9 0.31 P < 0.01 
NM_013653 Ccl5 0.30 P < 0.01 
NM_153159 Zc3h12a 0.30 P < 0.05 
NM_001029929 Zmynd15 0.30 P < 0.01 
BC033508 Ccl5 0.30 P < 0.01 
NM_030601 Clca2 0.28 P < 0.01 
NM_011414 Slpi 0.27 P < 0.01 
NM_009899 Clca1 0.26 P < 0.01 
NM_145857 Nod2 0.26 P < 0.01 
NM_172922 Ankk1 0.24 P < 0.01 
NM_021301 Slc15a2 0.24 P < 0.01 
NM_009890 Ch25h 0.22 P < 0.01 
NM_007825 Cyp7b1 0.22 P < 0.01 
NM_009969 Csf2 0.20 P < 0.01 
NM_013654 Ccl7 0.18 P < 0.05 
NM_013693 Tnf 0.16 P < 0.01 
NM_007752 Cp 0.13 P < 0.01 
NM_008176 Cxcl1 0.12 P < 0.01 
NM_009778 C3 0.11 P < 0.01 
NM_011333 Ccl2 0.11 P < 0.01 
NM_009971 Csf3 0.10 P < 0.01 
NM_016960 Ccl20 0.09 P < 0.01 
NM_009140 Cxcl2 0.09 P < 0.05 
NM_008491 Lcn2 0.04 P < 0.01 
NM_009141 Cxcl5 0.03 P < 0.01 
GenBank accession no. Symbol Ratio IL-1Ra/control P-value 
NM_021480 Tdh 5.79 P < 0.01 
NM_001008706 Calm5 5.74 P < 0.01 
NM_010660 Krt10 5.25 P < 0.01 
NM_008473 Krt1 5.08 P < 0.01 
NM_183136 Spink8 4.91 P < 0.01 
NM_031378 Gsdmc 4.09 P < 0.01 
NM_025416 Them5 4.08 P < 0.01 
NM_030703 Cpn1 3.93 P < 0.01 
NM_027548 Serpinb7 3.78 P < 0.01 
AY027660 Hrnr 3.53 P < 0.01 
NM_010079 Dsg1a 3.42 P < 0.01 
NM_177129 Cntn2 3.32 P < 0.01 
NM_023383 Aadac 3.08 P < 0.01 
NM_010203 Fgf5 3.06 P < 0.01 
NM_144936 Tmem45b 3.04 P < 0.05 
NM_020519 Slurp1 3.04 P < 0.01 
AY027660 Hrnr 2.91 P < 0.01 
NM_027416 Calml3 2.91 P < 0.01 
NM_007574 C1qc 2.89 P < 0.05 
NM_172806.2 Btbd7 2.81 P < 0.05 
NM_178924 Upk1b 2.72 P < 0.05 
NM_008524 Lum 2.68 P < 0.01 
NM_027286 Ace2 2.65 P < 0.01 
NM_028882 Sema3d 2.61 P < 0.01 
NM_033648 Fxyd4 2.61 P < 0.01 
NM_008190 Guca2a 2.52 P < 0.01 
NM_007717 Cmah 2.52 P < 0.01 
BC030317 Lrrc17 2.51 P < 0.01 
NM_008360 Il18 2.51 P < 0.01 
NM_018830 Asah2 2.50 P < 0.05 
NM_178381 Ano9 2.49 P < 0.01 
NM_010554 Il1a 0.35 P < 0.01 
NM_010809 Mmp3 0.34 P < 0.01 
NM_021274 Cxcl10 0.34 P < 0.01 
NM_007621 Cbr2 0.33 P < 0.01 
NM_013519 Foxc2 0.33 P < 0.01 
NM_007778 Csf1 0.32 P < 0.01 
NM_013599 Mmp9 0.31 P < 0.01 
NM_013653 Ccl5 0.30 P < 0.01 
NM_153159 Zc3h12a 0.30 P < 0.05 
NM_001029929 Zmynd15 0.30 P < 0.01 
BC033508 Ccl5 0.30 P < 0.01 
NM_030601 Clca2 0.28 P < 0.01 
NM_011414 Slpi 0.27 P < 0.01 
NM_009899 Clca1 0.26 P < 0.01 
NM_145857 Nod2 0.26 P < 0.01 
NM_172922 Ankk1 0.24 P < 0.01 
NM_021301 Slc15a2 0.24 P < 0.01 
NM_009890 Ch25h 0.22 P < 0.01 
NM_007825 Cyp7b1 0.22 P < 0.01 
NM_009969 Csf2 0.20 P < 0.01 
NM_013654 Ccl7 0.18 P < 0.05 
NM_013693 Tnf 0.16 P < 0.01 
NM_007752 Cp 0.13 P < 0.01 
NM_008176 Cxcl1 0.12 P < 0.01 
NM_009778 C3 0.11 P < 0.01 
NM_011333 Ccl2 0.11 P < 0.01 
NM_009971 Csf3 0.10 P < 0.01 
NM_016960 Ccl20 0.09 P < 0.01 
NM_009140 Cxcl2 0.09 P < 0.05 
NM_008491 Lcn2 0.04 P < 0.01 
NM_009141 Cxcl5 0.03 P < 0.01 

The differential gene list between the RAS-keratinocytes treated with IL-1ra versus RAS-keratinocyte control group was generated using limma R package with two different cutoffs for p-values.

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