| Reagent or resource . | Source . | Identifier . |
|---|---|---|
| Antibodies | ||
| Mouse monoclonal anti-HA (TANA2) | MBL | Catalog number M180-3, RRID:AB_10951811 |
| Rabbit polyclonal anti-TOMM20 (FL-145) | Santa Cruz Biotechnology | Catalog number sc-11415, RRID:AB_2207533 |
| Mouse monoclonal anti-MTCO2 (12C4F12) | Abcam | Catalog number Ab110258 |
| Mouse monoclonal anti-actin (C4) | Merck Millipore | Catalog number MAB1501R, RRID:AB_2223041 |
| Mouse monoclonal anti-DDDDK (FLA-1) | MBL | Catalog number M185-3L, RRID:AB_11123930 |
| Rabbit polyclonal anti-LC3B | Sigma-Aldrich | Catalog number L7543, RRID:AB_796155 |
| Guinea pig polyclonal anti-p62 | MBL | Catalog number PM066, RRID:AB_10952738 |
| Rabbit polyclonal anti-LC3B for immunofluorescence | MBL | Catalog number PM036, RRID:AB_2274121 |
| Mouse monoclonal anti-multi Ub (FK2) | MBL | Catalog number D058-3, RRID:AB_592937 |
| Rabbit monoclonal anti-Ub, Lys48-specific (Apu2) | Merck Millipore | Catalog number 05-1307, RRID:AB_1587578 |
| Rabbit monoclonal anti-Ub, Lys63-specific (Apu3) | Merck Millipore | Catalog number 05-1308, RRID:AB_1587580 |
| Mouse monoclonal anti-TOMM22 (1C9-2) | Sigma-Aldrich | Catalog number T6319, RRID:AB_261724 |
| Rabbit polyclonal anti-Azami-Green | MBL | Catalog number PM011M |
| rabbit polyclonal anti-TBK1 | Cell Signaling Technology | Catalog number 3013S, RRID:AB_2199749 |
| Rabbit monoclonal anti-phospho TBK1 (S172; D52C2) | Cell Signaling Technology | Catalog number 5483, RRID:AB_10693472 |
| Rat monoclonal anti-HA (3F10) | Roche | Catalog number 11867423001, RRID:AB_390918 |
| Rabbit polyclonal anti-DDDDK | MBL | Catalog number PM020, RRID:AB_591224 |
| Rabbit monoclonal anti-LDH (EP1566Y) | Abcam | Catalog number ab52488, RRID:AB_2134961 |
| Rabbit monoclonal anti-ATG13 (E1Y9V) | Cell Signaling Technology | Catalog number 13468S, RRID:AB_2797419 |
| Rabbit polyclonal anti-WIPI2 | Sigma-Aldrich | Catalog number SAB4200400 |
| rabbit polyclonal anti-ATG16L1 | MBL | Catalog number PM040, RRID:AB_1278757 |
| Rabbit monoclonal anti-ATG9A (EPR2450(2)) | Abcam | Catalog number ab108338, RRID:AB_10863880 |
| Rabbit monoclonal anti-FIP200 (D10D11) | Cell Signaling Technology | Catalog number 12436S, RRID:AB_2797913 |
| Rabbit polyclonal anti-OPTN | Proteintech | Catalog number 10837-1-AP, RRID:AB_2156665 |
| Rabbit monoclonal anti-NDP52 (D1E4A) | Cell Signaling Technology | Catalog number 60732, RRID:AB_2732810 |
| Mouse monoclonal anti-TOMM20 (F-10) | Santa Cruz Biotechnology | Catalog number sc-17764, RRID:AB_628381 |
| Mouse monoclonal anti-MFN2 (6A8) | Abcam | Catalog number ab56889, RRID:AB_2142629 |
| Mouse monoclonal anti-PDHA1 (8D10E6) | Abcam | Catalog number ab110334, RRID:AB_10866116 |
| Mouse monoclonal anti-PINK1 (38CT18.7) | LSBio | Catalog number LS-C96472, RRID:AB_10559463 |
| Goat polyclonal anti-HSP60 (N-20) | Santa Cruz Biotechnology | Catalog number sc-1052, RRID:AB_631683 |
| Goat anti-rabbit IgG Alexa Fluor 488 conjugated | Invitrogen | Catalog number A-11034 |
| Goat anti-rabbit IgG Alexa Fluor 568 conjugated | Invitrogen | Catalog number A-11036 |
| Goat anti-mouse IgG Alexa Fluor 488 conjugated | Invitrogen | Catalog number A-11029 |
| Goat anti-mouse IgG Alexa Fluor 568 conjugated | Invitrogen | Catalog number A-11031 |
| Goat anti-mouse IgG Alexa Fluor 647 conjugated | Invitrogen | Catalog number A-21236 |
| Goat anti-rat IgG Alexa Fluor 488 conjugated | Invitrogen | Catalog number A-11006 |
| Goat anti-rat IgG Alexa Fluor 568 conjugated | Invitrogen | Catalog number A-11077 |
| Goat anti-rat IgG Alexa Fluor 647 conjugated | Invitrogen | Catalog number A-21247 |
| Goat anti-guinea pig IgG Alexa Fluor 568 conjugated | Invitrogen | Catalog number A-11075 |
| Donkey anti-mouse IgG Alexa Fluor 488 conjugated | Abcam | Catalog number ab150105 |
| Donkey anti-rabbit IgG Alexa Fluor 568 conjugated | Abcam | Catalog number ab175470 |
| Donkey anti-goat IgG Alexa Fluor 647 conjugated | Invitrogen | Catalog number A-21447 |
| Goat Anti-rabbit IgG horseradish peroxidase-linked | Jackson ImmunoResearch | Catalog number 111-035-144 |
| Anti-mouse IgG horseradish peroxidase-linked | Promega | Catalog number W402B |
| Reagent or resource . | Source . | Identifier . |
|---|---|---|
| Antibodies | ||
| Mouse monoclonal anti-HA (TANA2) | MBL | Catalog number M180-3, RRID:AB_10951811 |
| Rabbit polyclonal anti-TOMM20 (FL-145) | Santa Cruz Biotechnology | Catalog number sc-11415, RRID:AB_2207533 |
| Mouse monoclonal anti-MTCO2 (12C4F12) | Abcam | Catalog number Ab110258 |
| Mouse monoclonal anti-actin (C4) | Merck Millipore | Catalog number MAB1501R, RRID:AB_2223041 |
| Mouse monoclonal anti-DDDDK (FLA-1) | MBL | Catalog number M185-3L, RRID:AB_11123930 |
| Rabbit polyclonal anti-LC3B | Sigma-Aldrich | Catalog number L7543, RRID:AB_796155 |
| Guinea pig polyclonal anti-p62 | MBL | Catalog number PM066, RRID:AB_10952738 |
| Rabbit polyclonal anti-LC3B for immunofluorescence | MBL | Catalog number PM036, RRID:AB_2274121 |
| Mouse monoclonal anti-multi Ub (FK2) | MBL | Catalog number D058-3, RRID:AB_592937 |
| Rabbit monoclonal anti-Ub, Lys48-specific (Apu2) | Merck Millipore | Catalog number 05-1307, RRID:AB_1587578 |
| Rabbit monoclonal anti-Ub, Lys63-specific (Apu3) | Merck Millipore | Catalog number 05-1308, RRID:AB_1587580 |
| Mouse monoclonal anti-TOMM22 (1C9-2) | Sigma-Aldrich | Catalog number T6319, RRID:AB_261724 |
| Rabbit polyclonal anti-Azami-Green | MBL | Catalog number PM011M |
| rabbit polyclonal anti-TBK1 | Cell Signaling Technology | Catalog number 3013S, RRID:AB_2199749 |
| Rabbit monoclonal anti-phospho TBK1 (S172; D52C2) | Cell Signaling Technology | Catalog number 5483, RRID:AB_10693472 |
| Rat monoclonal anti-HA (3F10) | Roche | Catalog number 11867423001, RRID:AB_390918 |
| Rabbit polyclonal anti-DDDDK | MBL | Catalog number PM020, RRID:AB_591224 |
| Rabbit monoclonal anti-LDH (EP1566Y) | Abcam | Catalog number ab52488, RRID:AB_2134961 |
| Rabbit monoclonal anti-ATG13 (E1Y9V) | Cell Signaling Technology | Catalog number 13468S, RRID:AB_2797419 |
| Rabbit polyclonal anti-WIPI2 | Sigma-Aldrich | Catalog number SAB4200400 |
| rabbit polyclonal anti-ATG16L1 | MBL | Catalog number PM040, RRID:AB_1278757 |
| Rabbit monoclonal anti-ATG9A (EPR2450(2)) | Abcam | Catalog number ab108338, RRID:AB_10863880 |
| Rabbit monoclonal anti-FIP200 (D10D11) | Cell Signaling Technology | Catalog number 12436S, RRID:AB_2797913 |
| Rabbit polyclonal anti-OPTN | Proteintech | Catalog number 10837-1-AP, RRID:AB_2156665 |
| Rabbit monoclonal anti-NDP52 (D1E4A) | Cell Signaling Technology | Catalog number 60732, RRID:AB_2732810 |
| Mouse monoclonal anti-TOMM20 (F-10) | Santa Cruz Biotechnology | Catalog number sc-17764, RRID:AB_628381 |
| Mouse monoclonal anti-MFN2 (6A8) | Abcam | Catalog number ab56889, RRID:AB_2142629 |
| Mouse monoclonal anti-PDHA1 (8D10E6) | Abcam | Catalog number ab110334, RRID:AB_10866116 |
| Mouse monoclonal anti-PINK1 (38CT18.7) | LSBio | Catalog number LS-C96472, RRID:AB_10559463 |
| Goat polyclonal anti-HSP60 (N-20) | Santa Cruz Biotechnology | Catalog number sc-1052, RRID:AB_631683 |
| Goat anti-rabbit IgG Alexa Fluor 488 conjugated | Invitrogen | Catalog number A-11034 |
| Goat anti-rabbit IgG Alexa Fluor 568 conjugated | Invitrogen | Catalog number A-11036 |
| Goat anti-mouse IgG Alexa Fluor 488 conjugated | Invitrogen | Catalog number A-11029 |
| Goat anti-mouse IgG Alexa Fluor 568 conjugated | Invitrogen | Catalog number A-11031 |
| Goat anti-mouse IgG Alexa Fluor 647 conjugated | Invitrogen | Catalog number A-21236 |
| Goat anti-rat IgG Alexa Fluor 488 conjugated | Invitrogen | Catalog number A-11006 |
| Goat anti-rat IgG Alexa Fluor 568 conjugated | Invitrogen | Catalog number A-11077 |
| Goat anti-rat IgG Alexa Fluor 647 conjugated | Invitrogen | Catalog number A-21247 |
| Goat anti-guinea pig IgG Alexa Fluor 568 conjugated | Invitrogen | Catalog number A-11075 |
| Donkey anti-mouse IgG Alexa Fluor 488 conjugated | Abcam | Catalog number ab150105 |
| Donkey anti-rabbit IgG Alexa Fluor 568 conjugated | Abcam | Catalog number ab175470 |
| Donkey anti-goat IgG Alexa Fluor 647 conjugated | Invitrogen | Catalog number A-21447 |
| Goat Anti-rabbit IgG horseradish peroxidase-linked | Jackson ImmunoResearch | Catalog number 111-035-144 |
| Anti-mouse IgG horseradish peroxidase-linked | Promega | Catalog number W402B |