Table 3.
Primary and secondary antibodies
Primary antibodiesSourceIdentifier
α-Tubulin (mouse, 1:10,000, used in WB only) Thermo Fisher Scientific 62204 
Atg8a, rat, 1:250 G. Juhasz laboratory, Eötvös Loránd University, Budapest, Hungary N/A 
ATP-synthase Abcam 14748 
BRP (Nc82), mouse, used 1:250 Developmental Studies Hybridoma Bank Nc82 
Cathepsin L, mouse, 1:200 R&D Systems MAB22591 
Dap160, rabbit, used 1:500 O. Shupliakov laboratory, Karolinska Institutet, Solna, Sweden N/A 
DOR/VPS18 H. Krämer laboratory, UT Southwestern, Dallas, TX N/A 
GFP (chicken, polyclonal, 1:2,000) Abcam ab13970 
GFP (rabbit), 1:500 Invitrogen A-11122 
GFP (mouse), 1:500 Invitrogen A-11120 
GM130, rabbit, 1:500 Abcam ab30637 
p62, rabbit, 1:250 G. Juhasz laboratory N/A 
Rab2 (rabbit, 1:5,000, used in WB only) Santa Cruz Biotechnology sc-285667 
Rbsn-5, rabbit, 1:1,000 A. Nakamura laboratory, RIKEN Center for Developmental Biology, Kobe, Japan N/A 
Rab7, rabbit, 1:1,000 A. Nakamura laboratory N/A 
RIM-BPN-term, rabbit, 1:500 S.J. Sigrist laboratory, Freie Universität Berlin, Berlin, Germany 9172 
Synapse defective-1 (Syd-1), rabbit, 1:250 S.J. Sigrist laboratory N/A 
Synaptotagmin, rabbit, 1:1,000 BD Bioscience N/A 
UNC13A, guinea pig, 1:500 S.J. Sigrist laboratory N/A 
VGlut, rabbit, 1:500 H. Aberle laboratory, Düsseldorf, Germany N/A 
Secondary antibodies   
Alexa 488 (anti-rabbit, 1:500) Invitrogen A-11008 
Alexa 488 (anti-mouse, 1:500) Invitrogen A-11001 
Alexa 594 (anti-rabbit, 1:500 for STED) Invitrogen A32754 
Alexa 594 (anti-mouse, 1:500 for STED) Invitrogen A32742 
Atto 647N (anti-rabbit, 1:500 for STED) Sigma-Aldrich 40839 
Atto 647N (anti-mouse, 1:500 for STED) Sigma-Aldrich 50185 
Cy3 (anti-rabbit, 1:500) Abcam ab6939 
Cy3 (anti-mouse, 1:500) Abcam ab97035 
HRP-Alexa647 (conjugated antibody), 1:500 Jackson ImmunoResearch 123-605-021 
Primary antibodiesSourceIdentifier
α-Tubulin (mouse, 1:10,000, used in WB only) Thermo Fisher Scientific 62204 
Atg8a, rat, 1:250 G. Juhasz laboratory, Eötvös Loránd University, Budapest, Hungary N/A 
ATP-synthase Abcam 14748 
BRP (Nc82), mouse, used 1:250 Developmental Studies Hybridoma Bank Nc82 
Cathepsin L, mouse, 1:200 R&D Systems MAB22591 
Dap160, rabbit, used 1:500 O. Shupliakov laboratory, Karolinska Institutet, Solna, Sweden N/A 
DOR/VPS18 H. Krämer laboratory, UT Southwestern, Dallas, TX N/A 
GFP (chicken, polyclonal, 1:2,000) Abcam ab13970 
GFP (rabbit), 1:500 Invitrogen A-11122 
GFP (mouse), 1:500 Invitrogen A-11120 
GM130, rabbit, 1:500 Abcam ab30637 
p62, rabbit, 1:250 G. Juhasz laboratory N/A 
Rab2 (rabbit, 1:5,000, used in WB only) Santa Cruz Biotechnology sc-285667 
Rbsn-5, rabbit, 1:1,000 A. Nakamura laboratory, RIKEN Center for Developmental Biology, Kobe, Japan N/A 
Rab7, rabbit, 1:1,000 A. Nakamura laboratory N/A 
RIM-BPN-term, rabbit, 1:500 S.J. Sigrist laboratory, Freie Universität Berlin, Berlin, Germany 9172 
Synapse defective-1 (Syd-1), rabbit, 1:250 S.J. Sigrist laboratory N/A 
Synaptotagmin, rabbit, 1:1,000 BD Bioscience N/A 
UNC13A, guinea pig, 1:500 S.J. Sigrist laboratory N/A 
VGlut, rabbit, 1:500 H. Aberle laboratory, Düsseldorf, Germany N/A 
Secondary antibodies   
Alexa 488 (anti-rabbit, 1:500) Invitrogen A-11008 
Alexa 488 (anti-mouse, 1:500) Invitrogen A-11001 
Alexa 594 (anti-rabbit, 1:500 for STED) Invitrogen A32754 
Alexa 594 (anti-mouse, 1:500 for STED) Invitrogen A32742 
Atto 647N (anti-rabbit, 1:500 for STED) Sigma-Aldrich 40839 
Atto 647N (anti-mouse, 1:500 for STED) Sigma-Aldrich 50185 
Cy3 (anti-rabbit, 1:500) Abcam ab6939 
Cy3 (anti-mouse, 1:500) Abcam ab97035 
HRP-Alexa647 (conjugated antibody), 1:500 Jackson ImmunoResearch 123-605-021 

N/A, not available; WB, Western blot.

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