Table 3. Basal cells: Identified HOMER... | Rockefeller University Press

Table 3.

Basal cells: Identified HOMER motifs and corresponding transcription factor names

HOMER motif	Name	h-Me	ATAC-seq
p63(p53)/Keratinocyte-p63-ChIP-Seq	TP63	Yes	Yes
p53(p53)/Saos-p53-ChIP-Seq	TP53	Yes	Yes
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq	NF1-halfsite	Yes	No
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)	TEAD4	Yes	No
Pax8(Paired/Homeobox)/Rat-Pax8-ChIP-Seq	PAX8	Yes	No
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq	TCF4	Yes	No
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)	AR-halfsite	Yes	No
X-box(HTH)/NPC-H3K4me1-ChIP-Seq	X-BOX(HTH)	Yes	No
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)	TCF7L2	Yes	No
NF1(CTF)/LNCAP-NF1-ChIP-Seq	NFIB	Yes	No
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)	TFAP4	Yes	No
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)	RFX5	Yes	No
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)	EGR2	Yes	Yes
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq	NFATC1	Yes	No
EGR(Zf)/K562-EGR1-ChIP-Seq	EGR1	Yes	Yes
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq	TEAD	Yes	No
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq	ATOH1	Yes	No
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq	RELA	Yes	No
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq	PPARG	Yes	No
Tcf3(HMG)/mES-Tcf3-ChIP-Seq	TCF3	Yes	No
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)	FOS	No	Yes
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq	JUN	No	Yes

HOMER motif	Name	h-Me	ATAC-seq
p63(p53)/Keratinocyte-p63-ChIP-Seq	TP63	Yes	Yes
p53(p53)/Saos-p53-ChIP-Seq	TP53	Yes	Yes
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq	NF1-halfsite	Yes	No
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)	TEAD4	Yes	No
Pax8(Paired/Homeobox)/Rat-Pax8-ChIP-Seq	PAX8	Yes	No
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq	TCF4	Yes	No
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)	AR-halfsite	Yes	No
X-box(HTH)/NPC-H3K4me1-ChIP-Seq	X-BOX(HTH)	Yes	No
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)	TCF7L2	Yes	No
NF1(CTF)/LNCAP-NF1-ChIP-Seq	NFIB	Yes	No
Ap4(HLH)/AML-Tfap4-ChIP-Seq(GSE45738)	TFAP4	Yes	No
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)	RFX5	Yes	No
Egr2/Thymocytes-Egr2-ChIP-Seq(GSE34254)	EGR2	Yes	Yes
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq	NFATC1	Yes	No
EGR(Zf)/K562-EGR1-ChIP-Seq	EGR1	Yes	Yes
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq	TEAD	Yes	No
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq	ATOH1	Yes	No
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq	RELA	Yes	No
PPARE(NR/DR1)/3T3L1-Pparg-ChIP-Seq	PPARG	Yes	No
Tcf3(HMG)/mES-Tcf3-ChIP-Seq	TCF3	Yes	No
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)	FOS	No	Yes
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq	JUN	No	Yes