Table 2. Luminal cells: Identified HOMER... | Rockefeller University Press

Table 2.

Luminal cells: Identified HOMER motifs and corresponding transcription factor names

HOMER motif	Name	h-Me	ATAC-seq
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq	FOXA1	Yes	Yes
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq	ETS1	Yes	No
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq	JUN	Yes	No
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)	FOS	Yes	No
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq	ETS1-distal	Yes	No
ERG(ETS)/VCaP-ERG-ChIP-Seq	ERG	Yes	No
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq	FOXA2	Yes	Yes
NF1(CTF)/LNCAP-NF1-ChIP-Seq	NFIB	Yes	Yes
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq	FOXO1	Yes	No
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)	ELF5	Yes	Yes
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)	NF1:FOXA1	Yes	Yes
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)	SPI1-IRF	Yes	No
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)	SPI1	Yes	Yes
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)	BACH2	Yes	No
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)	FOXP1	Yes	Yes
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq	NF1-halfsite	Yes	No
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)	FOX:EBOX	Yes	No
AP2gamma(AP2)/MCF7-TFAP2c-ChIP-Seq	TFAP2C	Yes	No
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)	BACH1	Yes	No
MyoD(HLH)/Myotube-MyoD-ChIP-Seq	MYOD1	Yes	No
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)	MYB	Yes	No
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)	NFE2L2	Yes	No
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq	PBX3	Yes	No
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq	TFAP2A	Yes	No
TR4(NR/DR1)/Hela-TR4-ChIP-Seq	NR2C2	Yes	No
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)	GATA3	Yes	Yes

HOMER motif	Name	h-Me	ATAC-seq
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq	FOXA1	Yes	Yes
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq	ETS1	Yes	No
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq	JUN	Yes	No
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)	FOS	Yes	No
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq	ETS1-distal	Yes	No
ERG(ETS)/VCaP-ERG-ChIP-Seq	ERG	Yes	No
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq	FOXA2	Yes	Yes
NF1(CTF)/LNCAP-NF1-ChIP-Seq	NFIB	Yes	Yes
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq	FOXO1	Yes	No
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)	ELF5	Yes	Yes
NF1:FOXA1/LNCAP-FOXA1-ChIP-Seq(GSE27824)	NF1:FOXA1	Yes	Yes
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)	SPI1-IRF	Yes	No
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)	SPI1	Yes	Yes
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)	BACH2	Yes	No
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)	FOXP1	Yes	Yes
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq	NF1-halfsite	Yes	No
Fox:Ebox(Forkhead:HLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)	FOX:EBOX	Yes	No
AP2gamma(AP2)/MCF7-TFAP2c-ChIP-Seq	TFAP2C	Yes	No
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)	BACH1	Yes	No
MyoD(HLH)/Myotube-MyoD-ChIP-Seq	MYOD1	Yes	No
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)	MYB	Yes	No
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)	NFE2L2	Yes	No
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq	PBX3	Yes	No
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq	TFAP2A	Yes	No
TR4(NR/DR1)/Hela-TR4-ChIP-Seq	NR2C2	Yes	No
GATA-IR3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)	GATA3	Yes	Yes