Table 1.
Protein localization information used for landmarks
ProteinAbbreviationNumber of cellsProtein sequenceUniProtLocalizationReference
Cytochrome b5 Cytb5 Mu: 10,428 99-134 P00167 ER D’Arrigo et al., 1993  
  Mu: 4,452     
Signal sequence of calreticulin, ER retention sequence (KDEL) Calr-KDEL Mu: 5,367 N/A P27797 ER Fliegel et al., 1989; Munro and Pelham, 1987  
  Hu: 24,059     
Bcl-2 interacting killer Bik Mu: 148,030 111-160 Q13323 ER Germain et al., 2002  
  Hu: 11,046     
Ribosome-attached membrane protein 4 RAMP4 Hu: 2,269 ­1–166 Q9Y6X1 ER Schröder et al., 1999  
ER-Golgi intermediate compartment 53 kD ERGIC53 Mu: 39,178 1–517 Q9D0F3 ERGIC Scheel et al., 1997  
  Hu: 73,059     
β1,4-galactosyl-transferase GalT Mu: 60,260 1–81 P15291 Trans-Golgi Roth and Berger, 1982  
  Hu: 19,797     
Golgin84 Golgin84 Mu: 147,916 674-731 Q8TBA6 Cis-Golgi Diao et al., 2003  
  Hu: 5,632     
Golgi SNAP receptor complex member 2 Membrin Hu: 19,288 1–212 O14653 Cis-Golgi Hong, 2005  
Monoamine oxidase A MAO Mu: 34,521 489-527 Q49A63 OMM de Champlain et al., 1969  
  Hu: 22,935     
Cytochrome c oxidase, subunit VIII CCO Mu: 11,023 1–29 Q53XN1 IMM Rizzuto et al., 1995  
  Hu: 92,159     
Phosphatidylserine synthase 1 PTDSS1 Mu: 137,908 1–473 Q99LH2 MAM, ER Stone and Vance, 2000  
Ras-related protein Rab3C Rab3 Hu: 27,545 1–227 Q96E17 Secretory vesicles Fischer von Mollard et al., 1994  
Ras-related protein Rab5A Rab5 Mu: 18,098 1–205 A0A024R2K1 Early endosome Chavrier et al., 1990  
  Hu: 27,137     
Ras-related protein Rab7A Rab7 Mu: 45,878 1–207 A0A158RFU6 Late endosome Bucci et al., 2000  
  Hu: 42,792     
Ras-related protein Rab11B Rab11B Hu: 21,961 1–218 Q15907 Recycling endosome Schlierf et al., 2000  
Vesicle-associated membrane protein 2 VAMP2 Mu: 19,411 1–116 P63027 Secretory vesicles Grote et al., 1995; Chen and Scheller, 2001  
  Hu: 12,239     
Vesicle-associated membrane protein 5 VAMP5 Mu: 43,352 1–116 O95183 Plasma membrane Hong, 2005  
  Hu: 39,946     
Neuromodulin Neuromodulin Hu: 17,852 1–20 P17677 Plasma membrane Skene and Virág, 1989  
Vesicle-associated membrane protein 1, TMD deleted ΔTMD-VAMP1 Mu: 19,074 1–99 P23763 Cytoplasm, nucleus This study 
Lamin A Lamin A Mu: 15,197 1–690 P02545 Nuclear envelope Scaffidi and Misteli, 2008  
Peroxisome targeting signal 1 PTS-1 Mu: 18,396 SKL N/A Peroxisome Gould et al., 1989  
  Hu: 27,712     
Lysosomal-associated membrane protein 1 LAMP-1 Mu: 14,974 1–417 P11279 Lysosomes Falcón-Pérez et al., 2005  
  Hu: 17,162     
Emerin Emerin Hu: 14,277 1–254 P50402 Nuclear envelope Pfaff et al., 2016  
ProteinAbbreviationNumber of cellsProtein sequenceUniProtLocalizationReference
Cytochrome b5 Cytb5 Mu: 10,428 99-134 P00167 ER D’Arrigo et al., 1993  
  Mu: 4,452     
Signal sequence of calreticulin, ER retention sequence (KDEL) Calr-KDEL Mu: 5,367 N/A P27797 ER Fliegel et al., 1989; Munro and Pelham, 1987  
  Hu: 24,059     
Bcl-2 interacting killer Bik Mu: 148,030 111-160 Q13323 ER Germain et al., 2002  
  Hu: 11,046     
Ribosome-attached membrane protein 4 RAMP4 Hu: 2,269 ­1–166 Q9Y6X1 ER Schröder et al., 1999  
ER-Golgi intermediate compartment 53 kD ERGIC53 Mu: 39,178 1–517 Q9D0F3 ERGIC Scheel et al., 1997  
  Hu: 73,059     
β1,4-galactosyl-transferase GalT Mu: 60,260 1–81 P15291 Trans-Golgi Roth and Berger, 1982  
  Hu: 19,797     
Golgin84 Golgin84 Mu: 147,916 674-731 Q8TBA6 Cis-Golgi Diao et al., 2003  
  Hu: 5,632     
Golgi SNAP receptor complex member 2 Membrin Hu: 19,288 1–212 O14653 Cis-Golgi Hong, 2005  
Monoamine oxidase A MAO Mu: 34,521 489-527 Q49A63 OMM de Champlain et al., 1969  
  Hu: 22,935     
Cytochrome c oxidase, subunit VIII CCO Mu: 11,023 1–29 Q53XN1 IMM Rizzuto et al., 1995  
  Hu: 92,159     
Phosphatidylserine synthase 1 PTDSS1 Mu: 137,908 1–473 Q99LH2 MAM, ER Stone and Vance, 2000  
Ras-related protein Rab3C Rab3 Hu: 27,545 1–227 Q96E17 Secretory vesicles Fischer von Mollard et al., 1994  
Ras-related protein Rab5A Rab5 Mu: 18,098 1–205 A0A024R2K1 Early endosome Chavrier et al., 1990  
  Hu: 27,137     
Ras-related protein Rab7A Rab7 Mu: 45,878 1–207 A0A158RFU6 Late endosome Bucci et al., 2000  
  Hu: 42,792     
Ras-related protein Rab11B Rab11B Hu: 21,961 1–218 Q15907 Recycling endosome Schlierf et al., 2000  
Vesicle-associated membrane protein 2 VAMP2 Mu: 19,411 1–116 P63027 Secretory vesicles Grote et al., 1995; Chen and Scheller, 2001  
  Hu: 12,239     
Vesicle-associated membrane protein 5 VAMP5 Mu: 43,352 1–116 O95183 Plasma membrane Hong, 2005  
  Hu: 39,946     
Neuromodulin Neuromodulin Hu: 17,852 1–20 P17677 Plasma membrane Skene and Virág, 1989  
Vesicle-associated membrane protein 1, TMD deleted ΔTMD-VAMP1 Mu: 19,074 1–99 P23763 Cytoplasm, nucleus This study 
Lamin A Lamin A Mu: 15,197 1–690 P02545 Nuclear envelope Scaffidi and Misteli, 2008  
Peroxisome targeting signal 1 PTS-1 Mu: 18,396 SKL N/A Peroxisome Gould et al., 1989  
  Hu: 27,712     
Lysosomal-associated membrane protein 1 LAMP-1 Mu: 14,974 1–417 P11279 Lysosomes Falcón-Pérez et al., 2005  
  Hu: 17,162     
Emerin Emerin Hu: 14,277 1–254 P50402 Nuclear envelope Pfaff et al., 2016  

The common name, abbreviation, and amino acid sequence used to construct the landmarks is indicated, with the UniProt ID for each of the coding regions. The reference provided includes the data for the assignment of localization and identification of the responsible targeting sequence. The number of cells refers to the number of cell images used in the analysis here. Hu, human image library; IMM, inner mitochondrial membrane; Mu, mouse image library; OMM, outer mitochondrial membrane.

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