Table 4.
Comparative proteomic analysis of WT and mutant axonemes
MutantProtein missing or greatly decreasedAccession numberDescriptionPredicted location
fap47-1 FAP47a XP_001691575.1 Flagellar associated protein Unknown 
FAP49 XP_001696011.1 Flagellar associated protein 
FAP72 XP_001696096.1 Flagellar associated protein 
FAP154 XP_001696012.1 Flagellar associated protein 
FAP414a XP_001694676.1 Predicted protein 
FAP416a XP_001691634.1 Predicted protein 
fap76-1 FAP76 XP_001694909.1 Flagellar associated protein C1 microtubuleb 
FAP413 XP_001696110.1 Predicted protein 
FAP414 XP_001694676.1 Predicted protein 
fap99-1 FAP99 XP_001692825.1 Flagellar associated protein C1 microtubuleb 
fap196-1 FAP196 XP_001697178.1 Flagellar associated protein Unknown 
FAP414c XP_001694676.1 Predicted protein 
fap246-1 FAP246 XP_001689839.1 Flagellar associated protein C1b projectiond 
FAP413 XP_001696110.1 Predicted protein 
dpy30-1 DPY30 XP_001695420.1 Subunit of chromatin modifying protein C1a projectiond 
MutantProtein missing or greatly decreasedAccession numberDescriptionPredicted location
fap47-1 FAP47a XP_001691575.1 Flagellar associated protein Unknown 
FAP49 XP_001696011.1 Flagellar associated protein 
FAP72 XP_001696096.1 Flagellar associated protein 
FAP154 XP_001696012.1 Flagellar associated protein 
FAP414a XP_001694676.1 Predicted protein 
FAP416a XP_001691634.1 Predicted protein 
fap76-1 FAP76 XP_001694909.1 Flagellar associated protein C1 microtubuleb 
FAP413 XP_001696110.1 Predicted protein 
FAP414 XP_001694676.1 Predicted protein 
fap99-1 FAP99 XP_001692825.1 Flagellar associated protein C1 microtubuleb 
fap196-1 FAP196 XP_001697178.1 Flagellar associated protein Unknown 
FAP414c XP_001694676.1 Predicted protein 
fap246-1 FAP246 XP_001689839.1 Flagellar associated protein C1b projectiond 
FAP413 XP_001696110.1 Predicted protein 
dpy30-1 DPY30 XP_001695420.1 Subunit of chromatin modifying protein C1a projectiond 
a

Repeatable in two biological replicates by IBAQ and one replicate by Top3; in the other replicate, Top3 reported that the protein was reduced in the mutant axonemes to only 0.27–0.37 of the WT level. Our cutoff for specificity was that a protein had to be reduced to ≤0.2 of the WT level.

b

Predicted location based on cluster analysis of Fig. 3.

c

IBAQ reported that this protein was reduced to <0.2 of the WT level in both biological replicates, whereas Top3 reported that it was present at 0.38 and 2.52 of the WT level in replicates 1 and 2, respectively.

d

Predicted location based on cluster analysis and supported by coimmunoprecipitation.

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