| Repeat . | Chromosome 6 position (hg19) . | Length . | Transcribed strand . |
|---|---|---|---|
| bp | |||
| LINE | |||
| L1PA2a | 96,206,263–96,212,288 | 6,026 | Minus |
| HAL1 | 96,215,594–96,215,921 | 328 | Plus |
| L1MD2 | 96,215,920–96,216,230 | 311 | Plus |
| HAL1 | 96,216,234–96,216,465 | 232 | Plus |
| L3 | 96,218,080–96,218,188 | 109 | Plus |
| L1MA1 | 96,223,585–96,223,754 | 170 | Plus |
| L1PREC2 | 96,223,756–96,223,956 | 201 | Plus |
| L1MA1 | 96,223,964–96,224,068 | 105 | Plus |
| L1PA13 | 96,224,064–96,225,806 | 1,743 | Plus |
| L1MC1 | 96,225,810–96,226,489 | 680 | Plus |
| L1MC4 | 96,226,559–96,227,116 | 558 | Plus |
| L1MC4 | 96,227,556–96,229,020 | 1,465 | Plus |
| LINE total: | 11,928 (40%) | ||
| SINE | |||
| MIRc | 96,213,709–96,213,816 | 108 | Minus |
| AluJb | 96,227,186–96,227,475 | 290 | Minus |
| AluSx | 96,229,071–96,229,360 | 290 | Minus |
| SINE total: | 688 (2.3%) | ||
| LTR | |||
| HERVL74-int | 96,216,904–96,217,915 | 1,012 | Minus |
| HERVL74-int | 96,217,938–96,218,078 | 141 | Minus |
| MERV74A | 96,218,220–96,218,674 | 455 | Minus |
| MLT1A | 96,222,658–96,222,737 | 80 | Minus |
| THE1D | 96,231,271–96,231,628 | 358 | Plus |
| LTR total: | 2,046 (6.9%) | ||
| DNA | |||
| MER1B | 96,216,576–-96,216,899 | 324 | Minus |
| Tigger3b | 96,219,639–96,220,452 | 814 | Minus |
| MER96B | 96,222,553–96,222,642 | 90 | Plus |
| DNA total: | 1,228 (4.1%) | ||
| Total: 29,569 | Repeat total: | 15,890 (54%) | |
| Repeat . | Chromosome 6 position (hg19) . | Length . | Transcribed strand . |
|---|---|---|---|
| bp | |||
| LINE | |||
| L1PA2a | 96,206,263–96,212,288 | 6,026 | Minus |
| HAL1 | 96,215,594–96,215,921 | 328 | Plus |
| L1MD2 | 96,215,920–96,216,230 | 311 | Plus |
| HAL1 | 96,216,234–96,216,465 | 232 | Plus |
| L3 | 96,218,080–96,218,188 | 109 | Plus |
| L1MA1 | 96,223,585–96,223,754 | 170 | Plus |
| L1PREC2 | 96,223,756–96,223,956 | 201 | Plus |
| L1MA1 | 96,223,964–96,224,068 | 105 | Plus |
| L1PA13 | 96,224,064–96,225,806 | 1,743 | Plus |
| L1MC1 | 96,225,810–96,226,489 | 680 | Plus |
| L1MC4 | 96,226,559–96,227,116 | 558 | Plus |
| L1MC4 | 96,227,556–96,229,020 | 1,465 | Plus |
| LINE total: | 11,928 (40%) | ||
| SINE | |||
| MIRc | 96,213,709–96,213,816 | 108 | Minus |
| AluJb | 96,227,186–96,227,475 | 290 | Minus |
| AluSx | 96,229,071–96,229,360 | 290 | Minus |
| SINE total: | 688 (2.3%) | ||
| LTR | |||
| HERVL74-int | 96,216,904–96,217,915 | 1,012 | Minus |
| HERVL74-int | 96,217,938–96,218,078 | 141 | Minus |
| MERV74A | 96,218,220–96,218,674 | 455 | Minus |
| MLT1A | 96,222,658–96,222,737 | 80 | Minus |
| THE1D | 96,231,271–96,231,628 | 358 | Plus |
| LTR total: | 2,046 (6.9%) | ||
| DNA | |||
| MER1B | 96,216,576–-96,216,899 | 324 | Minus |
| Tigger3b | 96,219,639–96,220,452 | 814 | Minus |
| MER96B | 96,222,553–96,222,642 | 90 | Plus |
| DNA total: | 1,228 (4.1%) | ||
| Total: 29,569 | Repeat total: | 15,890 (54%) | |
Repetitive elements were identified from Repeat Masker (http://www.repeatmasker.org). The chromosomal position, length in base pairs, and transcribed strand within ASAR6 are indicated.
Near full-length LINE critical for normal replication timing.