| Gene . | Forward primer (5′–3′) . | Reverse primer (5′–3′) . |
|---|---|---|
| PGK1 | AAAGTCAGCCATGTGAGCACT | CCACCCCAGGAAGGACTTTA |
| ULK1 | CTGTGCAGATGGTGCAGTC | CACAGATGCCAGTCAGCAG |
| ULK2 | CACAAATACTGCTTGGAAAGGA | CACCAAAAAGACAGAGTTGGG |
| Atg2A | CCGTGTATGACATCCTGTCC | ACGTCACAGATGGTCTGAGC |
| Atg2B | GCTGCTTCCTTTGGTACCTC | GTCTGAGCCGTGTCTGTGAT |
| Atg3 | AGAAGGAGGGGGAGAACTTG | GGTCAATGGTCACATCTATGG |
| Atg4A | AACCTGGATCCTTCAGTTGC | CAAACTCCTCCAGTTGCTCA |
| Atg4B | ACTGGGAAGATGGACGCAG | AGTATCCAAACGGGCTCTGA |
| Atg5 | TCAGAAGCTGTTTCGTCCTG | TGCAGAGGTGTTTCCAACAT |
| BECN1 | TGGACACGAGTTTCAAGATCC | CTCCTGGGTCTCTCCTGGTT |
| Atg7 | ATAATGTCCTTCCCGTCAGC | TCTCATCATCGCTCATGTCC |
| LC3A | CGACCGCTGTAAGGAGGTA | TTGACCAACTCGCTCATGTT |
| LC3B | GAGAAGACCTTCAAGCAGCG | TATCACCGGGATTTTGGTTG |
| LC3C | CTGACCATGACCCAGTTCCT | TGTACACGAAGCCATCCTCA |
| GABARAP | ATGTCATTCCACCCACCAGT | TTGAGCTTGAAGGAGGAGGA |
| GABARAPL1 | TCGGAAAAAGGAAGGAGAAA | TGGCCAACAGTAAGGTCAGA |
| GABARAPL2 | CTGTGGCTCAGTTCATGTGG | GTGTTCTCTCCGCTGTAGGC |
| Atg9A | CTGGAGCTCCTGAGACCACT | CCCTGCTCAGCCTTGTCTAT |
| Atg9B | CTGCAAGGAAAAGCTCTGG | ACAACCCCAAGGTGTGAGAC |
| Atg10 | CATTGTAGGGCCAGTTGTTG | CATTTGTGTCCAAGGGAAAA |
| Atg12 | TTGTGGCCTCAGAACAGTTG | CCATCACTGCCAAAACACTC |
| Atg13 | GGTGTCATCCTGTTCCTCCT | GGGACTCCTTCCTTCTTCCT |
| Atg14 | ACAACCACTGCATACCCTCA | CGCTCTCATCTGATTCTCCA |
| Atg16L1 | GGTTCTTTCAAAGCAGCACA | CTCTGGGAGGTCCATGCTAT |
| Vps18 | GCGCTTGTGTCCATGTCTAC | GCCATGGCTGTCTGTACATC |
| WIPI1 | GGGACCAGTGTGTCTTGATG | GTGGTTTAAGCAGTGGAGCA |
| WIPI2 | CTCGCTAGCCACAATTCAGA | CACCCAGGTCGTCTGTGTAG |
| Atg101 | CCCAGGATGTTGACTGTGAC | CTACCACATGCACCTTGACC |
| FIP200 | GACCCTGGGTACTTGGAAAA | AGCACTGCAGGACAAATCAG |
| UVRAG | CAAAAGGAGGGGAGAAGTTG | CCCCAAATATGGAGCTTTGT |
| PIK3C3 | CCTTGTCGATGAGCTTTGGT | CAGATGGATCAGAACCCACA |
| PI3KR4 | GGTCCTATGTTGTTGCAGGA | CACACCTTCACAATCCCATC |
| Vps11 | TAACAGTGCCTTGGAGTTGC | GAAAAGCTGTCATTGGAGCA |
| p62 | CCCGTCTACAGGTGAACTCC | CTGGGAGAGGGACTCAATCA |
| NBR1 | GTTGCTGCCTCTGCATACAA | TTTCTTCAGCAGCCGTAGGT |
| NDP52 | AAGGAGGCGCAAGACAAAAT | ATCTGCTGTTGCTCCAAGGT |
| OPTN | GTCCTTGATGGAGATGCAGA | AGGCAGAACCTCTCCACACT |
| CtsA | GGATTCCCTCAACCAGAAGA | TGGTCATCAGTATGGCTGCT |
| Lamp1 | TGCCTTTAAAGCTGCCAAC | TTCTCGTCCAGCAGACACTC |
| CtsD | CCAGAGGACTACACGCTCAA | CTGCTCTGGGACTCTCCTCT |
| CtsF | CTTTGGCATGCAGTTTTACC | GGACCCACGATGCAAGTAGT |
| MColn1 | TACATGGTGCTCAGCCTCTT | GTCGAATCAATTCACCAGCA |
| Clcn7 | AGTGCACCATGGACCTCTC | AGCTCCTCCAAGCCTCTCTT |
| Nrf2 | CGGTATGCAACAGGACATTG | AGAGGATGCTGCTGAAGGAA |
| NF-E2 | CTAGAGCCATCTGGGCTTTC | GCAGTAAGTTGTGGGTGGTG |
| KLF4 | GCCACCCACACTTGTGATTA | CCCGTGTGTTTACGGTAGTG |
| HDAC6 | TGGTCCTCAGCTACATCGAC | GCTACCCCTCATCCAAGGTA |
| Gene . | Forward primer (5′–3′) . | Reverse primer (5′–3′) . |
|---|---|---|
| PGK1 | AAAGTCAGCCATGTGAGCACT | CCACCCCAGGAAGGACTTTA |
| ULK1 | CTGTGCAGATGGTGCAGTC | CACAGATGCCAGTCAGCAG |
| ULK2 | CACAAATACTGCTTGGAAAGGA | CACCAAAAAGACAGAGTTGGG |
| Atg2A | CCGTGTATGACATCCTGTCC | ACGTCACAGATGGTCTGAGC |
| Atg2B | GCTGCTTCCTTTGGTACCTC | GTCTGAGCCGTGTCTGTGAT |
| Atg3 | AGAAGGAGGGGGAGAACTTG | GGTCAATGGTCACATCTATGG |
| Atg4A | AACCTGGATCCTTCAGTTGC | CAAACTCCTCCAGTTGCTCA |
| Atg4B | ACTGGGAAGATGGACGCAG | AGTATCCAAACGGGCTCTGA |
| Atg5 | TCAGAAGCTGTTTCGTCCTG | TGCAGAGGTGTTTCCAACAT |
| BECN1 | TGGACACGAGTTTCAAGATCC | CTCCTGGGTCTCTCCTGGTT |
| Atg7 | ATAATGTCCTTCCCGTCAGC | TCTCATCATCGCTCATGTCC |
| LC3A | CGACCGCTGTAAGGAGGTA | TTGACCAACTCGCTCATGTT |
| LC3B | GAGAAGACCTTCAAGCAGCG | TATCACCGGGATTTTGGTTG |
| LC3C | CTGACCATGACCCAGTTCCT | TGTACACGAAGCCATCCTCA |
| GABARAP | ATGTCATTCCACCCACCAGT | TTGAGCTTGAAGGAGGAGGA |
| GABARAPL1 | TCGGAAAAAGGAAGGAGAAA | TGGCCAACAGTAAGGTCAGA |
| GABARAPL2 | CTGTGGCTCAGTTCATGTGG | GTGTTCTCTCCGCTGTAGGC |
| Atg9A | CTGGAGCTCCTGAGACCACT | CCCTGCTCAGCCTTGTCTAT |
| Atg9B | CTGCAAGGAAAAGCTCTGG | ACAACCCCAAGGTGTGAGAC |
| Atg10 | CATTGTAGGGCCAGTTGTTG | CATTTGTGTCCAAGGGAAAA |
| Atg12 | TTGTGGCCTCAGAACAGTTG | CCATCACTGCCAAAACACTC |
| Atg13 | GGTGTCATCCTGTTCCTCCT | GGGACTCCTTCCTTCTTCCT |
| Atg14 | ACAACCACTGCATACCCTCA | CGCTCTCATCTGATTCTCCA |
| Atg16L1 | GGTTCTTTCAAAGCAGCACA | CTCTGGGAGGTCCATGCTAT |
| Vps18 | GCGCTTGTGTCCATGTCTAC | GCCATGGCTGTCTGTACATC |
| WIPI1 | GGGACCAGTGTGTCTTGATG | GTGGTTTAAGCAGTGGAGCA |
| WIPI2 | CTCGCTAGCCACAATTCAGA | CACCCAGGTCGTCTGTGTAG |
| Atg101 | CCCAGGATGTTGACTGTGAC | CTACCACATGCACCTTGACC |
| FIP200 | GACCCTGGGTACTTGGAAAA | AGCACTGCAGGACAAATCAG |
| UVRAG | CAAAAGGAGGGGAGAAGTTG | CCCCAAATATGGAGCTTTGT |
| PIK3C3 | CCTTGTCGATGAGCTTTGGT | CAGATGGATCAGAACCCACA |
| PI3KR4 | GGTCCTATGTTGTTGCAGGA | CACACCTTCACAATCCCATC |
| Vps11 | TAACAGTGCCTTGGAGTTGC | GAAAAGCTGTCATTGGAGCA |
| p62 | CCCGTCTACAGGTGAACTCC | CTGGGAGAGGGACTCAATCA |
| NBR1 | GTTGCTGCCTCTGCATACAA | TTTCTTCAGCAGCCGTAGGT |
| NDP52 | AAGGAGGCGCAAGACAAAAT | ATCTGCTGTTGCTCCAAGGT |
| OPTN | GTCCTTGATGGAGATGCAGA | AGGCAGAACCTCTCCACACT |
| CtsA | GGATTCCCTCAACCAGAAGA | TGGTCATCAGTATGGCTGCT |
| Lamp1 | TGCCTTTAAAGCTGCCAAC | TTCTCGTCCAGCAGACACTC |
| CtsD | CCAGAGGACTACACGCTCAA | CTGCTCTGGGACTCTCCTCT |
| CtsF | CTTTGGCATGCAGTTTTACC | GGACCCACGATGCAAGTAGT |
| MColn1 | TACATGGTGCTCAGCCTCTT | GTCGAATCAATTCACCAGCA |
| Clcn7 | AGTGCACCATGGACCTCTC | AGCTCCTCCAAGCCTCTCTT |
| Nrf2 | CGGTATGCAACAGGACATTG | AGAGGATGCTGCTGAAGGAA |
| NF-E2 | CTAGAGCCATCTGGGCTTTC | GCAGTAAGTTGTGGGTGGTG |
| KLF4 | GCCACCCACACTTGTGATTA | CCCGTGTGTTTACGGTAGTG |
| HDAC6 | TGGTCCTCAGCTACATCGAC | GCTACCCCTCATCCAAGGTA |