The subset of genes of TGF-β network significantly up-regulated in each of the four stages in the normal muscle regeneration process and the t test results
| Gene | Probe set | P-value | Fold change |
| 0.5–1 d vs. control | |||
| Hif1a | 98628_f_at | <0.01 | 7.576 |
| Hif1a | 98629_f_at | <0.01 | 7.666 |
| Lox | 160095_at | <0.05 | 6.818 |
| Rassf1 | 102379_at | <0.01 | 3.911 |
| S100a11 | 98600_at | <0.05 | 9.611 |
| 1–3 d vs. control | |||
| Acly | 160207_at | <0.001 | 3.721 |
| Bgn | 162347_f_at | <0.01 | 3.643 |
| Bgn | 96049_at | <0.01 | 3.013 |
| Cap1 | 93721_at | <0.001 | 4.548 |
| Cfl1 | 99119_at | <0.001 | 10.262 |
| Cnn3 | 160150_f_at | <0.05 | 2.748 |
| Dab2 | 104633_at | <0.01 | 9.586 |
| Dab2 | 98044_at | <0.01 | 4.343 |
| Dab2 | 98045_s_at | <0.001 | 22.223 |
| Eng | 100134_at | <0.001 | 3.961 |
| Hif1a | 98628_f_at | <0.001 | 7.293 |
| Hif1a | 98629_f_at | <0.001 | 7.546 |
| Ifi30 | 97444_at | <0.01 | 19.497 |
| Lox | 160095_at | <0.01 | 9.566 |
| Loxl1 | 103850_at | <0.001 | 4.622 |
| Rassf1 | 102379_at | <0.01 | 3.11 |
| S100a11 | 98600_at | <0.001 | 10.499 |
| Sdcbp | 93017_at | <0.001 | 13.648 |
| Serpinh1 | 94817_at | <0.01 | 3.182 |
| Tgfb1 | 101918_at | <0.01 | 9.295 |
| Tgfbi | 92877_at | <0.001 | 13.304 |
| Tpm4 | 95542_at | <0.001 | 5.322 |
| Tpm4 | 95543_at | <0.001 | 5.865 |
| Tubb2a | 94835_f_at | <0.01 | 7.055 |
| 4.5–14 d vs. control | |||
| Bgn | 162347_f_at | <0.001 | 6.38 |
| Bgn | 96049_at | <0.01 | 4.61 |
| Bmp1 | 92701_at | <0.001 | 3.69 |
| Cfl1 | 99119_at | <0.001 | 4.415 |
| Cnn3 | 160150_f_at | <0.001 | 3.484 |
| Col3a1 | 102990_at | <0.001 | 13.005 |
| Col5a1 | 101080_at | <0.001 | 10.476 |
| Col5a1 | 93472_at | <0.001 | 4.456 |
| Col5a2 | 92567_at | <0.001 | 7.531 |
| Col6a1 | 162459_f_at | <0.001 | 3.744 |
| Col6a1 | 95493_at | <0.01 | 3.064 |
| Col6a2 | 93517_at | <0.001 | 4.097 |
| Col6a3 | 101110_at | <0.01 | 6.551 |
| Csrp2 | 93550_at | <0.001 | 6.048 |
| Dab2 | 104633_at | <0.001 | 3.517 |
| Dab2 | 98045_s_at | <0.001 | 5.182 |
| Eng | 100134_at | <0.001 | 2.702 |
| Hif1a | 98628_f_at | <0.001 | 3.57 |
| Hif1a | 98629_f_at | <0.001 | 3.659 |
| Ifi30 | 97444_at | <0.001 | 9.03 |
| Lox | 160095_at | <0.001 | 8.897 |
| Loxl1 | 103850_at | <0.001 | 5.968 |
| S100a11 | 98600_at | <0.001 | 4.693 |
| Sdcbp | 93017_at | <0.001 | 5.552 |
| Serpinh1 | 94817_at | <0.05 | 3.431 |
| Tgfb1 | 101918_at | <0.01 | 4.799 |
| Tgfbi | 92877_at | <0.001 | 3.619 |
| Tpm4 | 95542_at | <0.001 | 3.229 |
| Tpm4 | 95543_at | <0.001 | 4.181 |
| Tubb2a | 94835_f_at | <0.001 | 4.807 |
| 20–40 d vs. control | |||
| Col5a1 | 101080_at | <0.01 | 2.999 |
| Loxl1 | 103850_at | <0.01 | 2.592 |
| Gene | Probe set | P-value | Fold change |
| 0.5–1 d vs. control | |||
| Hif1a | 98628_f_at | <0.01 | 7.576 |
| Hif1a | 98629_f_at | <0.01 | 7.666 |
| Lox | 160095_at | <0.05 | 6.818 |
| Rassf1 | 102379_at | <0.01 | 3.911 |
| S100a11 | 98600_at | <0.05 | 9.611 |
| 1–3 d vs. control | |||
| Acly | 160207_at | <0.001 | 3.721 |
| Bgn | 162347_f_at | <0.01 | 3.643 |
| Bgn | 96049_at | <0.01 | 3.013 |
| Cap1 | 93721_at | <0.001 | 4.548 |
| Cfl1 | 99119_at | <0.001 | 10.262 |
| Cnn3 | 160150_f_at | <0.05 | 2.748 |
| Dab2 | 104633_at | <0.01 | 9.586 |
| Dab2 | 98044_at | <0.01 | 4.343 |
| Dab2 | 98045_s_at | <0.001 | 22.223 |
| Eng | 100134_at | <0.001 | 3.961 |
| Hif1a | 98628_f_at | <0.001 | 7.293 |
| Hif1a | 98629_f_at | <0.001 | 7.546 |
| Ifi30 | 97444_at | <0.01 | 19.497 |
| Lox | 160095_at | <0.01 | 9.566 |
| Loxl1 | 103850_at | <0.001 | 4.622 |
| Rassf1 | 102379_at | <0.01 | 3.11 |
| S100a11 | 98600_at | <0.001 | 10.499 |
| Sdcbp | 93017_at | <0.001 | 13.648 |
| Serpinh1 | 94817_at | <0.01 | 3.182 |
| Tgfb1 | 101918_at | <0.01 | 9.295 |
| Tgfbi | 92877_at | <0.001 | 13.304 |
| Tpm4 | 95542_at | <0.001 | 5.322 |
| Tpm4 | 95543_at | <0.001 | 5.865 |
| Tubb2a | 94835_f_at | <0.01 | 7.055 |
| 4.5–14 d vs. control | |||
| Bgn | 162347_f_at | <0.001 | 6.38 |
| Bgn | 96049_at | <0.01 | 4.61 |
| Bmp1 | 92701_at | <0.001 | 3.69 |
| Cfl1 | 99119_at | <0.001 | 4.415 |
| Cnn3 | 160150_f_at | <0.001 | 3.484 |
| Col3a1 | 102990_at | <0.001 | 13.005 |
| Col5a1 | 101080_at | <0.001 | 10.476 |
| Col5a1 | 93472_at | <0.001 | 4.456 |
| Col5a2 | 92567_at | <0.001 | 7.531 |
| Col6a1 | 162459_f_at | <0.001 | 3.744 |
| Col6a1 | 95493_at | <0.01 | 3.064 |
| Col6a2 | 93517_at | <0.001 | 4.097 |
| Col6a3 | 101110_at | <0.01 | 6.551 |
| Csrp2 | 93550_at | <0.001 | 6.048 |
| Dab2 | 104633_at | <0.001 | 3.517 |
| Dab2 | 98045_s_at | <0.001 | 5.182 |
| Eng | 100134_at | <0.001 | 2.702 |
| Hif1a | 98628_f_at | <0.001 | 3.57 |
| Hif1a | 98629_f_at | <0.001 | 3.659 |
| Ifi30 | 97444_at | <0.001 | 9.03 |
| Lox | 160095_at | <0.001 | 8.897 |
| Loxl1 | 103850_at | <0.001 | 5.968 |
| S100a11 | 98600_at | <0.001 | 4.693 |
| Sdcbp | 93017_at | <0.001 | 5.552 |
| Serpinh1 | 94817_at | <0.05 | 3.431 |
| Tgfb1 | 101918_at | <0.01 | 4.799 |
| Tgfbi | 92877_at | <0.001 | 3.619 |
| Tpm4 | 95542_at | <0.001 | 3.229 |
| Tpm4 | 95543_at | <0.001 | 4.181 |
| Tubb2a | 94835_f_at | <0.001 | 4.807 |
| 20–40 d vs. control | |||
| Col5a1 | 101080_at | <0.01 | 2.999 |
| Loxl1 | 103850_at | <0.01 | 2.592 |