Table 1. List of the 56 transcript genes... | Rockefeller University Press

Table 1.

List of the 56 transcript genes in the TGF-β network

Gene	Probe set	P-value	Fold change
ACLY	210337_s_at	0.051	1.125
ASPN	219087_at	<0.001	3.537
BGN	213905_x_at	<0.001	3.717
BMP1	207595_s_at	0.165	1.089
BNIP3L	221478_at	<0.001	1.406
CALD1	212077_at	<0.001	1.767
CAP1	200625_s_at	<0.001	2.218
CAV2	203324_s_at	<0.001	1.76
CFL1	200021_at	<0.001	1.695
CNN3	201445_at	<0.001	2.274
COL1A1	202310_s_at	<0.001	5.386
COL1A2	202404_s_at	<0.001	4.89
COL3A1	211161_s_at	<0.001	3.387
COL4A1	211981_at	<0.001	2.469
COL4A2	211966_at	<0.001	2.762
COL5A1	212489_at	<0.001	2.58
COL5A2	221729_at	<0.001	3.379
COL6A1	213428_s_at	<0.001	2.045
COL6A2	209156_s_at	<0.001	2.251
COL6A3	201438_at	<0.001	2.131
COLEC12	221019_s_at	<0.001	2.363
CSRP2	207030_s_at	<0.001	1.524
CUGBP2	202158_s_at	<0.001	1.537
CYB561	209163_at	<0.001	1.27
DAB2	201280_s_at	<0.001	2.385
ECGF1	204858_s_at	<0.001	2.037
EMILIN1	204163_at	<0.01	2.002
ENG	201809_s_at	<0.001	1.441
HIF1A	200989_at	<0.001	1.981
IFI30	201422_at	<0.001	1.886
JAG1	209098_s_at	<0.001	1.458
KDELR2	200699_at	<0.001	1.361
LOX	215446_s_at	<0.001	2.516
LOXL1	203570_at	<0.001	2.013
LOXL2	202998_s_at	<0.001	1.744
LTBP3	219922_s_at	<0.001	1.507
PGCP	208454_s_at	<0.01	1.237
PGRMC1	201121_s_at	<0.001	1.495
PLOD2	202620_s_at	<0.001	1.725
PLS3	201215_at	<0.001	1.59
RASSF1	204346_s_at	<0.05	−1.163
RSU1	201980_s_at	<0.001	1.522
S100A11	200660_at	<0.001	2.888
SDC2	212158_at	0.269	1.132
SDC3	202898_at	<0.001	2.136
SDCBP	200958_s_at	<0.001	1.408
SERPINH1	207714_s_at	<0.001	1.73
SPARC	200665_s_at	<0.001	2.205
TAX1BP3	209154_at	<0.001	1.64
TBCD	211052_s_at	<0.001	1.581
TGFB1	203085_s_at	<0.001	2.626
TGFBI	201506_at	<0.001	1.852
TGFBR2	208944_at	<0.001	1.852
TGFBR3	204731_at	0.065	1.213
TPM4	209344_at	<0.001	2.086
TUBB2A	204141_at	<0.001	2.16

Gene	Probe set	P-value	Fold change
ACLY	210337_s_at	0.051	1.125
ASPN	219087_at	<0.001	3.537
BGN	213905_x_at	<0.001	3.717
BMP1	207595_s_at	0.165	1.089
BNIP3L	221478_at	<0.001	1.406
CALD1	212077_at	<0.001	1.767
CAP1	200625_s_at	<0.001	2.218
CAV2	203324_s_at	<0.001	1.76
CFL1	200021_at	<0.001	1.695
CNN3	201445_at	<0.001	2.274
COL1A1	202310_s_at	<0.001	5.386
COL1A2	202404_s_at	<0.001	4.89
COL3A1	211161_s_at	<0.001	3.387
COL4A1	211981_at	<0.001	2.469
COL4A2	211966_at	<0.001	2.762
COL5A1	212489_at	<0.001	2.58
COL5A2	221729_at	<0.001	3.379
COL6A1	213428_s_at	<0.001	2.045
COL6A2	209156_s_at	<0.001	2.251
COL6A3	201438_at	<0.001	2.131
COLEC12	221019_s_at	<0.001	2.363
CSRP2	207030_s_at	<0.001	1.524
CUGBP2	202158_s_at	<0.001	1.537
CYB561	209163_at	<0.001	1.27
DAB2	201280_s_at	<0.001	2.385
ECGF1	204858_s_at	<0.001	2.037
EMILIN1	204163_at	<0.01	2.002
ENG	201809_s_at	<0.001	1.441
HIF1A	200989_at	<0.001	1.981
IFI30	201422_at	<0.001	1.886
JAG1	209098_s_at	<0.001	1.458
KDELR2	200699_at	<0.001	1.361
LOX	215446_s_at	<0.001	2.516
LOXL1	203570_at	<0.001	2.013
LOXL2	202998_s_at	<0.001	1.744
LTBP3	219922_s_at	<0.001	1.507
PGCP	208454_s_at	<0.01	1.237
PGRMC1	201121_s_at	<0.001	1.495
PLOD2	202620_s_at	<0.001	1.725
PLS3	201215_at	<0.001	1.59
RASSF1	204346_s_at	<0.05	−1.163
RSU1	201980_s_at	<0.001	1.522
S100A11	200660_at	<0.001	2.888
SDC2	212158_at	0.269	1.132
SDC3	202898_at	<0.001	2.136
SDCBP	200958_s_at	<0.001	1.408
SERPINH1	207714_s_at	<0.001	1.73
SPARC	200665_s_at	<0.001	2.205
TAX1BP3	209154_at	<0.001	1.64
TBCD	211052_s_at	<0.001	1.581
TGFB1	203085_s_at	<0.001	2.626
TGFBI	201506_at	<0.001	1.852
TGFBR2	208944_at	<0.001	1.852
TGFBR3	204731_at	0.065	1.213
TPM4	209344_at	<0.001	2.086
TUBB2A	204141_at	<0.001	2.16

List of the 56 transcript genes in the TGF-β network (Fig. 1 A) and their fold changes and p-values of t test for testing the significance of their changes between two groups: up-regulated group (DMD, JDM, and ED-D) and down-regulated group (FSH, NHM, and ALS). The results shown were from the data processed with PLIER. Those few transcripts showing nonsignificant p-values here are included, as they met significance thresholds with dCHIP mismatch probe set algorithm (not depicted).

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