Table 2.

smt3allR SGA correlation analysis

Category  Gene  Correlation  
SUMO system    
SUMO system components  ubc9-2  0.430  
 SMT3_damp  0.338  
 mms21-1  0.329  
 ulp1-333  0.263  
 NFI1  0.087  
NPC components–Ulp1 localization  NUP60  0.328  
 NUP133  0.228  
 nup145-R4  0.223  
 SRP1_damp  0.149  
 NUP84  0.113  
 GLE2  0.130  
 YLL023C  0.109  
 nup57-E17  0.094  
 NUP49_damp  0.091  
Chromatin remodeling    
Histone chaperone  ASF1  0.247  
Chromatin silencing  ESC2  0.294  
 RTT109  0.141  
 RAP1_damp  0.116  
 MOT3  0.110  
 YAP1  0.109  
 RIF1  0.099  
Chromatin assembly factor (CAF-1)  CAC2  0.176  
 RLF2  0.148  
 MSI1  0.090  
Histones  HTA1  0.139  
 HTZ1  0.123  
 HHF1  0.119  
SWR1 complex  SWR1  0.144  
 HTZ1  0.123  
 VPS71  0.108  
 ARP6  0.105  
 swc4-4  0.099  
 VPS72  0.098  
 SWC3  0.097  
DNA replication and repair    
MRX complex  MRE11  0.166  
 XRS2  0.154  
 RAD50  0.138  
 SAE2  0.127  
MCM complex  cdc47-ts  0.217  
 mcm3-1  0.132  
 cdc46-1  0.127  
Mms21–Smc5–Smc6 complex  mms21-1  0.329  
 nse3-ts4  0.287  
 nse4-ts2  0.263  
 kre29-ts2  0.213  
 nse4-ts4  0.183  
 nse3-ts3  0.175  
 nse5-ts4  0.165  
 smc5-6  0.152  
 nse4-ts3  0.151  
 smc6-9  0.147  
 nse5-ts2  0.118  
Pol2–TOF1–MRC1–CSM3 complex  MRC1  0.206  
 pol2-12  0.182  
 CSM3  0.180  
 TOF1  0.141  
Origin recognition complex  orc2-2  0.157  
 orc2-4  0.096  
 orc3-70  0.095  
Ribonuclease 2  RNH203  0.138  
 RNH202  0.137  
Polymerase delta  POL32  0.231  
 cdc2-1  0.219  
 cdc2-7  0.185  
 cdc2-2  0.167  
Mms4–Mus81 complex  MMS4  0.177  
 MUS81  0.156  
Pol1-DNA primase  pol12-ts  0.192  
 pol1-13  0.128  
 pol1-ts  0.120  
 pol1-1  0.118  
 pri2-1  0.109  
RFC complex  ELG1  0.271  
 rfc4-20  0.214  
 rfc5-1  0.153  
 RAD24  0.116  
 CTF18  0.101  
 CHL1  0.097  
 DCC1  0.092  
Other  RAD27  0.242  
 RRM3  0.192  
 RTT107  0.168  
 psf1-1  0.158  
 DUN1  0.146  
 DDC1  0.133  
 RNR4  0.120  
 CLB5  0.119  
 RAP1_damp  0.116  
 dpb11-1  0.111  
 MMS22  0.108  
 RAD5  0.100  
 RAD54  0.098  
 REV3  0.098  
 RAD17  0.097  
 cdc6-1  0.097  
 RAD55  0.090  
Ubiquitin–proteasome system    
STUbL  SLX8  0.393  
 SLX5  0.247  
Cdc48  cdc48-2  0.183  
 SHP1  0.160  
 cdc48-3  0.145  
 OTU1  0.081  
APC/C  apc5-CA  0.162  
 apc2-8  0.161  
 cdc20-2  0.161  
 cdc20-1  0.134  
 cdc16-1  0.130  
 cdc23-1  0.102  
SCF  DIA2  0.169  
 UBC4  0.105  
Proteasome  rpn12-1  0.155  
 rpn11-8  0.127  
 SCL1_damp  0.118  
 rpn11-14  0.107  
 rpt1-1  0.107  
 RPN4  0.100  
 rpt6-20  0.091  
Miscellaneous    
Spindle/kinetochore  spc105-15  0.154  
 LTE1  0.152  
 BUB3  0.149  
 KAR3  0.135  
 CIK1  0.129  
 CLB5  0.119  
 BUB1  0.105  
 stu2-12  0.094  
 stu2-11  0.092  
HOG pathway signaling  SSK2  0.120  
 PBS2  0.082  
Vesicle/vacuole  ALF1_damp  0.160  
 LTE1  0.152  
 VID22  0.133  
 ICE2  0.105  
 PGA3_damp  0.104  
 EMC2  0.102  
 VPS21  0.101  
Mitochondrial function  MRH4  0.193  
 MSW1  0.187  
 PET111  0.131  
 MRP49  0.100  
 YDR065W  0.100  
 PET8  0.092  
 SOV1  0.092  
 QCR8  0.090  
 MRPL19  0.090  

194 genes display a positive correlation with the smt3allR genetic map. Genes are grouped according to functional categories.

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