Table 1.

Selected GO biological processes significantly enriched among genes down-regulated in prephenotype DRGs from dt27J mice

Category Targets P-value Fold enrichment Example gene products 
Transport 561 4.30 E−20 1.4 DLC2, KCL2, and DNM1 
Vesicle-mediated transport 125 8.90 E−08 1.7 DNM1, CLTB, and HTT 
Cytoskeleton organization 77 6.50 E−03 1.5 DNAHC9, MAPT, and TUBGCP2 
Synaptic transmission 76 4.30 E−15 2.7 APBA1, CDK5, and KIF1B 
Neurotransmitter secretion 21 3.30 E−06 3.7 SYN1, SYN2, and VAMP2 
MT bundle formation 14 3.70 E−04 4.5 TPPP, MAP1B, and SPAST 
Category Targets P-value Fold enrichment Example gene products 
Transport 561 4.30 E−20 1.4 DLC2, KCL2, and DNM1 
Vesicle-mediated transport 125 8.90 E−08 1.7 DNM1, CLTB, and HTT 
Cytoskeleton organization 77 6.50 E−03 1.5 DNAHC9, MAPT, and TUBGCP2 
Synaptic transmission 76 4.30 E−15 2.7 APBA1, CDK5, and KIF1B 
Neurotransmitter secretion 21 3.30 E−06 3.7 SYN1, SYN2, and VAMP2 
MT bundle formation 14 3.70 E−04 4.5 TPPP, MAP1B, and SPAST 

The p-values given are using Fisher’s exact test with correction for multiple hypothesis testing by the algorithm of Benjamini and Hochberg (1995). The background set of genes used was the entire mouse genome.

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