Characteristics of 2-Mb chromatin environments surrounding erythroid up-regulated genes
| Gene . | Chromosome . | 2-Mb coordinates . | Number of genes . | Coding density . | Number of CpG islands . | GC content . |
|---|---|---|---|---|---|---|
| % | % | |||||
| HBA | HSA 16 | 1-2000000 | 114 | 11.7 | 256 | 57.25 ± 22.7 |
| ERAF | HSA 16 | 30446680-32446680 | 55 | 6.6 | 72 | 49.07 ± 23.7 |
| SLC4A1 | HSA 17 | 38691896-40691896 | 61 | 8 | 81 | 45.49 ± 23.6 |
| GATA1 | HSA X | 47529906-49529906 | 62 | 5.8 | 60 | 45.39 ± 23.1 |
| HBB | HSA 11 | 4204075-6204075 | 84 | 4.9 | 1 | 38.5 ± 21.7 |
| hba | MMU 11 | 31184083-33184083 | 26 | 3 | NA | 45.3 ± 21.5 |
| Gene . | Chromosome . | 2-Mb coordinates . | Number of genes . | Coding density . | Number of CpG islands . | GC content . |
|---|---|---|---|---|---|---|
| % | % | |||||
| HBA | HSA 16 | 1-2000000 | 114 | 11.7 | 256 | 57.25 ± 22.7 |
| ERAF | HSA 16 | 30446680-32446680 | 55 | 6.6 | 72 | 49.07 ± 23.7 |
| SLC4A1 | HSA 17 | 38691896-40691896 | 61 | 8 | 81 | 45.49 ± 23.6 |
| GATA1 | HSA X | 47529906-49529906 | 62 | 5.8 | 60 | 45.39 ± 23.1 |
| HBB | HSA 11 | 4204075-6204075 | 84 | 4.9 | 1 | 38.5 ± 21.7 |
| hba | MMU 11 | 31184083-33184083 | 26 | 3 | NA | 45.3 ± 21.5 |
GC, guanine-cytosine; NA, not applicable. Genes counted have Ensembl gene IDs, and the coding densities of the full-length transcripts are based on data from the Ensembl genome browser. All other data were obtained from the University of California Santa Cruz genome browser. CpG islands scored are >200 bp with >50% guanine-cytosine content and >0.6 observed/expected ratio. Guanine-cytosine percent content is scanned in five base windows, and SDs are given.