Table 1.

List of NE proteins demonstrated to be degraded by autophagy or the UPS

NE proteinSpeciesDegradation mechanismE3 ligaseReference
Mps3 Saccharomyces cerevisiae UPS Anaphase-promoting complex Koch et al. (2019)  
Heh2 Saccharomyces cerevisiae UPS Asi1 Smoyer et al. (2019)  
Per33 Saccharomyces cerevisiae UPS Asi1 Smoyer et al. (2019)  
Asi2 Saccharomyces cerevisiae UPS Asi1, Doa10 Smoyer et al. (2019); Pantazopoulou et al. (2016)  
Asi1 Saccharomyces cerevisiae UPS Unknown Pantazopoulou et al. (2016)  
Nup85 Saccharomyces cerevisiae UPS Unknown Webster et al. (2014)  
Heh1 Saccharomyces cerevisiae Nucleophagy NA Mochida et al. (2015)  
Hmg1 Saccharomyces cerevisiae Nucleophagy NA Mochida et al. (2015)  
Nur1 Saccharomyces cerevisiae Nucleophagy NA Mostofa et al. (2018)  
Whole NPCs Saccharomyces cerevisiae Nucleophagy NA Tomioka et al. (2020); Lee et al. (2020)  
Nurim Mouse UPS Unknown Buchwalter et al. (2019)  
Nup62 Mouse UPS Unknown Zhu et al. (2016)  
Nup153 Mouse UPS Unknown Zhu et al. (2016)  
Nup214 Mouse UPS Unknown Zhu et al. (2016)  
Nup358 Mouse UPS Unknown Zhu et al. (2016)  
Lamin B Mouse, zebrafish UPS Wdr26 Zhen et al. (2020)  
β-Dystroglycan Mouse UPS Unknown Vélez-Aguilera et al. (2018)  
Emerin Mouse, human UPS (mouse and human), nucleophagy (human) Unknown Buchwalter et al. (2019); Muchir et al. (2006); Lenain et al. (2015)  
SUN1 Arabidopsis, human UPS (Arabidopsis), nucleophagy (human) Unknown Huang et al. (2020); Lenain et al. (2015)  
SUN2 Human UPS Skp1βTRCP1/2 Coyaud et al. (2015); Kim et al. (2015)  
LBR Human UPS, nucleophagy Unknown Tsai et al. (2016); Lenain et al. (2015)  
Nup188 Human UPS Unknown Vishnoi et al. (2020)  
LAP2α Human UPS RNF123 Khanna et al. (2018)  
Lamin B1 Human UPS, nucleophagy RNF123 Dou et al. (2015); Khanna et al. (2018); Lenain et al. (2015)  
NE proteinSpeciesDegradation mechanismE3 ligaseReference
Mps3 Saccharomyces cerevisiae UPS Anaphase-promoting complex Koch et al. (2019)  
Heh2 Saccharomyces cerevisiae UPS Asi1 Smoyer et al. (2019)  
Per33 Saccharomyces cerevisiae UPS Asi1 Smoyer et al. (2019)  
Asi2 Saccharomyces cerevisiae UPS Asi1, Doa10 Smoyer et al. (2019); Pantazopoulou et al. (2016)  
Asi1 Saccharomyces cerevisiae UPS Unknown Pantazopoulou et al. (2016)  
Nup85 Saccharomyces cerevisiae UPS Unknown Webster et al. (2014)  
Heh1 Saccharomyces cerevisiae Nucleophagy NA Mochida et al. (2015)  
Hmg1 Saccharomyces cerevisiae Nucleophagy NA Mochida et al. (2015)  
Nur1 Saccharomyces cerevisiae Nucleophagy NA Mostofa et al. (2018)  
Whole NPCs Saccharomyces cerevisiae Nucleophagy NA Tomioka et al. (2020); Lee et al. (2020)  
Nurim Mouse UPS Unknown Buchwalter et al. (2019)  
Nup62 Mouse UPS Unknown Zhu et al. (2016)  
Nup153 Mouse UPS Unknown Zhu et al. (2016)  
Nup214 Mouse UPS Unknown Zhu et al. (2016)  
Nup358 Mouse UPS Unknown Zhu et al. (2016)  
Lamin B Mouse, zebrafish UPS Wdr26 Zhen et al. (2020)  
β-Dystroglycan Mouse UPS Unknown Vélez-Aguilera et al. (2018)  
Emerin Mouse, human UPS (mouse and human), nucleophagy (human) Unknown Buchwalter et al. (2019); Muchir et al. (2006); Lenain et al. (2015)  
SUN1 Arabidopsis, human UPS (Arabidopsis), nucleophagy (human) Unknown Huang et al. (2020); Lenain et al. (2015)  
SUN2 Human UPS Skp1βTRCP1/2 Coyaud et al. (2015); Kim et al. (2015)  
LBR Human UPS, nucleophagy Unknown Tsai et al. (2016); Lenain et al. (2015)  
Nup188 Human UPS Unknown Vishnoi et al. (2020)  
LAP2α Human UPS RNF123 Khanna et al. (2018)  
Lamin B1 Human UPS, nucleophagy RNF123 Dou et al. (2015); Khanna et al. (2018); Lenain et al. (2015)  

NA, not applicable.

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