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Table 2.
List of genes in the beMφ-50 signature
SymbolEnsemblEntrezName
Abca1 ENSMUSG00000015243 11303 ATP-binding cassette, subfamily A (ABC1), member 1 
Arhgef10l ENSMUSG00000040964 72754 Rho guanine nucleotide exchange factor 10-like 
Car9 ENSMUSG00000028463 230099 Carbonic anhydrase 9 
Cln6 ENSMUSG00000032245 76524 Ceroid-lipofuscinosis, neuronal 6 
Cxcr3 ENSMUSG00000050232 12766 Chemokine (C-X-C motif) receptor 3 
Cysltr2 ENSMUSG00000033470 70086 Cysteinyl leukotriene receptor 2 
Dclre1c ENSMUSG00000026648 227525 DNA cross-link repair 1C 
Dnajb14 ENSMUSG00000074212 70604 DnaJ heat shock protein family (Hsp40) member B14 
Fap ENSMUSG00000000392 14089 Fibroblast activation protein 
Fgf2 ENSMUSG00000037225 14173 Fibroblast growth factor 2 
Flt3 ENSMUSG00000042817 14255 FMS-like tyrosine kinase 3 
Frmd6 ENSMUSG00000048285 319710 FERM domain containing 6 
Fzd7 ENSMUSG00000041075 14369 Frizzled class receptor 7 
Galc ENSMUSG00000021003 14420 Galactosylceramidase 
Gk ENSMUSG00000025059 14933 Glycerol kinase 
Gpr176 ENSMUSG00000040133 381413 G protein–coupled receptor 176 
H2-T10 ENSMUSG00000079491 15024 Histocompatibility 2, T region locus 10 
Hoxb4 ENSMUSG00000038692 15412 Homeobox B4 
Ifnar1 ENSMUSG00000022967 15975 Interferon (alpha and beta) receptor 1 
Jag1 ENSMUSG00000027276 16449 Jagged 1 
Kcnn4 ENSMUSG00000054342 16534 Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 
Lpar6 ENSMUSG00000033446 67168 Lysophosphatidic acid receptor 6 
Ltbp3 ENSMUSG00000024940 16998 Latent transforming growth factor beta binding protein 3 
Nrp1 ENSMUSG00000025810 18186 Neuropilin 1 
Pcgf2 ENSMUSG00000018537 22658 Polycomb group ring finger 2 
Pgap1 ENSMUSG00000073678 241062 Post-GPI attachment to proteins 1 
Pi4k2b ENSMUSG00000029186 67073 Phosphatidylinositol 4-kinase type 2 beta 
Plekhg5 ENSMUSG00000039713 269608 Pleckstrin homology domain containing, family G (with RhoGef domain) member 5 
Pmepa1 ENSMUSG00000038400 65112 Prostate transmembrane protein, androgen induced 1 
Qpct ENSMUSG00000024084 70536 Glutaminyl-peptide cyclotransferase (glutaminyl cyclase) 
Rap2a ENSMUSG00000051615 76108 RAS related protein 2a 
Rgs1 ENSMUSG00000026358 50778 Regulator of G-protein signaling 1 
S1pr1 ENSMUSG00000045092 13609 Sphingosine-1-phosphate receptor 1 
Sesn1 ENSMUSG00000038332 140742 Sestrin 1 
Sestd1 ENSMUSG00000042272 228071 SEC14 and spectrin domains 1 
Sgsh ENSMUSG00000005043 27029 N-sulfoglucosamine sulfohydrolase (sulfamidase) 
Sh3d19 ENSMUSG00000028082 27059 SH3 domain protein D19 
Slc26a11 ENSMUSG00000039908 268512 Solute carrier family 26, member 11 
Slc44a1 ENSMUSG00000028412 100434 Solute carrier family 44, member 1 
Slit1 ENSMUSG00000025020 20562 Slit homologue 1 (Drosophila
Stab1 ENSMUSG00000042286 192187 Stabilin 1 
Stbd1 ENSMUSG00000047963 52331 Starch binding domain 1 
Tlr8 ENSMUSG00000040522 170744 Toll-like receptor 8 
Tmem176b ENSMUSG00000029810 65963 Transmembrane protein 176B 
Tnfrsf11a ENSMUSG00000026321 21934 Tumor necrosis factor receptor superfamily, member 11a, NF-κB activator 
Tpst1 ENSMUSG00000034118 22021 Protein-tyrosine sulfotransferase 1 
Txndc16 ENSMUSG00000021830 70561 Thioredoxin domain containing 16 
Xylt2 ENSMUSG00000020868 217119 Xylosyltransferase II 
Zdhhc23 ENSMUSG00000036304 332175 Zinc-finger, DHHC domain containing 23 
Znrf3 ENSMUSG00000041961 407821 Zinc and ring finger 3 
SymbolEnsemblEntrezName
Abca1 ENSMUSG00000015243 11303 ATP-binding cassette, subfamily A (ABC1), member 1 
Arhgef10l ENSMUSG00000040964 72754 Rho guanine nucleotide exchange factor 10-like 
Car9 ENSMUSG00000028463 230099 Carbonic anhydrase 9 
Cln6 ENSMUSG00000032245 76524 Ceroid-lipofuscinosis, neuronal 6 
Cxcr3 ENSMUSG00000050232 12766 Chemokine (C-X-C motif) receptor 3 
Cysltr2 ENSMUSG00000033470 70086 Cysteinyl leukotriene receptor 2 
Dclre1c ENSMUSG00000026648 227525 DNA cross-link repair 1C 
Dnajb14 ENSMUSG00000074212 70604 DnaJ heat shock protein family (Hsp40) member B14 
Fap ENSMUSG00000000392 14089 Fibroblast activation protein 
Fgf2 ENSMUSG00000037225 14173 Fibroblast growth factor 2 
Flt3 ENSMUSG00000042817 14255 FMS-like tyrosine kinase 3 
Frmd6 ENSMUSG00000048285 319710 FERM domain containing 6 
Fzd7 ENSMUSG00000041075 14369 Frizzled class receptor 7 
Galc ENSMUSG00000021003 14420 Galactosylceramidase 
Gk ENSMUSG00000025059 14933 Glycerol kinase 
Gpr176 ENSMUSG00000040133 381413 G protein–coupled receptor 176 
H2-T10 ENSMUSG00000079491 15024 Histocompatibility 2, T region locus 10 
Hoxb4 ENSMUSG00000038692 15412 Homeobox B4 
Ifnar1 ENSMUSG00000022967 15975 Interferon (alpha and beta) receptor 1 
Jag1 ENSMUSG00000027276 16449 Jagged 1 
Kcnn4 ENSMUSG00000054342 16534 Potassium intermediate/small conductance calcium-activated channel, subfamily N, member 4 
Lpar6 ENSMUSG00000033446 67168 Lysophosphatidic acid receptor 6 
Ltbp3 ENSMUSG00000024940 16998 Latent transforming growth factor beta binding protein 3 
Nrp1 ENSMUSG00000025810 18186 Neuropilin 1 
Pcgf2 ENSMUSG00000018537 22658 Polycomb group ring finger 2 
Pgap1 ENSMUSG00000073678 241062 Post-GPI attachment to proteins 1 
Pi4k2b ENSMUSG00000029186 67073 Phosphatidylinositol 4-kinase type 2 beta 
Plekhg5 ENSMUSG00000039713 269608 Pleckstrin homology domain containing, family G (with RhoGef domain) member 5 
Pmepa1 ENSMUSG00000038400 65112 Prostate transmembrane protein, androgen induced 1 
Qpct ENSMUSG00000024084 70536 Glutaminyl-peptide cyclotransferase (glutaminyl cyclase) 
Rap2a ENSMUSG00000051615 76108 RAS related protein 2a 
Rgs1 ENSMUSG00000026358 50778 Regulator of G-protein signaling 1 
S1pr1 ENSMUSG00000045092 13609 Sphingosine-1-phosphate receptor 1 
Sesn1 ENSMUSG00000038332 140742 Sestrin 1 
Sestd1 ENSMUSG00000042272 228071 SEC14 and spectrin domains 1 
Sgsh ENSMUSG00000005043 27029 N-sulfoglucosamine sulfohydrolase (sulfamidase) 
Sh3d19 ENSMUSG00000028082 27059 SH3 domain protein D19 
Slc26a11 ENSMUSG00000039908 268512 Solute carrier family 26, member 11 
Slc44a1 ENSMUSG00000028412 100434 Solute carrier family 44, member 1 
Slit1 ENSMUSG00000025020 20562 Slit homologue 1 (Drosophila
Stab1 ENSMUSG00000042286 192187 Stabilin 1 
Stbd1 ENSMUSG00000047963 52331 Starch binding domain 1 
Tlr8 ENSMUSG00000040522 170744 Toll-like receptor 8 
Tmem176b ENSMUSG00000029810 65963 Transmembrane protein 176B 
Tnfrsf11a ENSMUSG00000026321 21934 Tumor necrosis factor receptor superfamily, member 11a, NF-κB activator 
Tpst1 ENSMUSG00000034118 22021 Protein-tyrosine sulfotransferase 1 
Txndc16 ENSMUSG00000021830 70561 Thioredoxin domain containing 16 
Xylt2 ENSMUSG00000020868 217119 Xylosyltransferase II 
Zdhhc23 ENSMUSG00000036304 332175 Zinc-finger, DHHC domain containing 23 
Znrf3 ENSMUSG00000041961 407821 Zinc and ring finger 3 

List of the 50 up-regulated genes identified to distinguish beMφ from microglia via the approach outlined in Fig. 5 A.

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