Rockefeller University Press

Table 2

Junctional Regions of BV6s from vSAG9-stimulated Cells of Donors S and M

Donor S						Donor M
BV		N-D-N	BJ		n^*	BV		N-D-N	BJ		n^*
6S5	CASS	LPTGGVED	TIYFG	1S3	1/18	6S5	CASS	FPSGGL	YEQYFG	2S7	1/9
6S5	CASS	SLNSG	NQPQHFG	1S5	1/18	6S5	CASS	LEHSTRP	YEQYFG	2S7	8/9
6S5	CASS	PQNSG	NQPQHFG	1S5	9/18
6S5	CASS	PENSG	NQPQHFG	1S5	4/18	6S7^*2	CASS	YRVG	EKLFFG	1S4	1/25
6S5	CASS	PNSG	NQPQHFG	1S5	1/18	6S7^*2	CASS	LVGTTDQG	KLFFG	1S4	1/25
6S5	CASS	WGLAW	NEQFFG	2S1	1/18	6S7^*2	CASS	LDGRN	NSPLHFG	1S6	1/25
6S5	CASS	LDRGS	EQFGG	2S1	1/18	6S7^*2	CASS	QDTS	SYNEQFFG	2S1	1/25
						6S7^*2	CASS	PGAGGPP	YNEQFFG	2S1	1/25
6S7^*2	CASS	LNQLKH	TEAFFG	1S1	1/22	6S7^*2	CASS	KGGAGP	YNEQFFG	2S1	1/25
6S7^*2	CASS	LSAGTI	EAFFG	1S1	1/22	6S7^*2	CASS	WRGSSTN	NEQFFG	2S1	1/25
6S7^*2	CASS	LTRD	YGYTFG	1S2	1/22	6S7^*2	CASS	LVAGGQ	NEQFFG	2S1	1/25
6S7^*2	CASS	LTRGA	GNTIYFG	1S3	1/22	6S7^*2	CASS	AGTSGGG	EQFFG	2S1	1/25
6S7^*2	CASS	RPEGQYR	NTIYFG	1S3	1/22	6S7^*2	CASS	LLPFQ	QFFG	2S1	1/25
6S7^*2	CASS	TQTG	QPQHFG	1S5	1/22	6S7^*2	CASS	YKGGGPT	TDTQYFG	2S3	1/25
6S7^*2	CASS	LQWGG	NSPLHFG	1S6	1/22	6S7^*2	CASS	SRFVAGG	TDTQYFG	2S3	1/25
6S7^*2	CASS	LANGGIG	SPLHFG	1S6	1/22	6S7^*2	CASS	FRSVG	TDTQYFG	2S3	1/25
6S7^*2	CASS	RALLREQD	SYNEQFFG	2S1	1/22	6S7^*2	CASS	PFSSR	TDTQYFG	2S3	1/25
6S7^*2	CASS	YQS	YNEQFFG	2S1	1/22	6S7^*2	CASS	SRGFR	TDTQYFG	2S3	1/25
6S7^*2	CASS	LTGRVN	NEQFFG	2S1	1/22	6S7^*2	CASS	PRGSGR	DTQYFG	2S3	1/25
6S7^*2	CASS	SEYVTI	EQFFG	2S1	1/22	6S7^*2	CASS	STVV	DTQYFG	2S3	1/25
6S7^*2	CASS	SGTSS	EQFFG	2S1	1/22	6S7^*2	CASS	SMGR	QETQYFG	2S5	1/25
6S7^*2	CASS	QGGGQA	GELFFG	2S2	1/22	6S7^*2	CASS	LTLGGY	ETQYFG	2S5	1/25
6S7^*2	CASS	PRFI	TDTQYFG	2S3	1/22	6S7^*2	CASS	ARRV	ETQYFG	2S5	1/25
6S7^*2	CASS	SRLVTLGS	FG	2S3	1/22	6S7^*2	CASS	SDH	YEQYFG	2S7	1/25
6S7^*2	CASS	SGLAGV	AKNIQYFG	2S4	1/22	6S7^*2	CASS	GT	YEQYFG	2S7	1/25
6S7^*2	CASS	LAPRD	YEQYFG	2S7	1/22	6S7^*2	CASS	LSLGSS	EQYFG	2S7	1/25
6S7^*2	CASS	FMDT	YEQYFG	2S7	1/22	6S7^*2	CASS	QTV	EQYFG	2S7	1/25
6S7^*2	CASS	AGLALR	EQYFG	2S7	1/22	6S7^*2	CASS	QP	YFG	2S7	1/25
6S7^*2	CASS	FGGSG	QYFG	2S7	1/22
						6S1	CASS	GG	TDTQYFG	2S3	2/9
6S1	CASS	LFKG	SYNEQFFG	2S1	1/7	6S3	CASS	EGQGASD	EQFFG	2S1	1/9
6S1	CASS	YRDTF	SGANVLTFG	2S6	1/7	6S4	CASS	PERL	SGNTIYFG	1S3	1/9
6S3	CASS	LIGG	SYEQYFG	2S7	1/7	6S4	CAST	LRTGN	NEQFFG	2S1	1/9
6S3	CASS	TSRST	EQYFG	2S7	1/7	6S4	CASS	LTSGRAR	DTQYFG	2S3	1/9
6S4	CASS	LESTGAR	NTIYFG	1S3	1/7	6S4	CASS	GARGSGE	QETQYFG	2S5	1/9
6S4	CASS	HKGG	TGELFFG	2S2	1/7	6S4	CASS	LGR	ETQYFG	2S5	1/9
6S4	CASS	LAAGA	DTQYFG	2S3	1/7	6S4	CASS	PQEGG	YEQYFG	2S7	1/9

Donor S						Donor M
BV		N-D-N	BJ		n^*	BV		N-D-N	BJ		n^*
6S5	CASS	LPTGGVED	TIYFG	1S3	1/18	6S5	CASS	FPSGGL	YEQYFG	2S7	1/9
6S5	CASS	SLNSG	NQPQHFG	1S5	1/18	6S5	CASS	LEHSTRP	YEQYFG	2S7	8/9
6S5	CASS	PQNSG	NQPQHFG	1S5	9/18
6S5	CASS	PENSG	NQPQHFG	1S5	4/18	6S7^*2	CASS	YRVG	EKLFFG	1S4	1/25
6S5	CASS	PNSG	NQPQHFG	1S5	1/18	6S7^*2	CASS	LVGTTDQG	KLFFG	1S4	1/25
6S5	CASS	WGLAW	NEQFFG	2S1	1/18	6S7^*2	CASS	LDGRN	NSPLHFG	1S6	1/25
6S5	CASS	LDRGS	EQFGG	2S1	1/18	6S7^*2	CASS	QDTS	SYNEQFFG	2S1	1/25
						6S7^*2	CASS	PGAGGPP	YNEQFFG	2S1	1/25
6S7^*2	CASS	LNQLKH	TEAFFG	1S1	1/22	6S7^*2	CASS	KGGAGP	YNEQFFG	2S1	1/25
6S7^*2	CASS	LSAGTI	EAFFG	1S1	1/22	6S7^*2	CASS	WRGSSTN	NEQFFG	2S1	1/25
6S7^*2	CASS	LTRD	YGYTFG	1S2	1/22	6S7^*2	CASS	LVAGGQ	NEQFFG	2S1	1/25
6S7^*2	CASS	LTRGA	GNTIYFG	1S3	1/22	6S7^*2	CASS	AGTSGGG	EQFFG	2S1	1/25
6S7^*2	CASS	RPEGQYR	NTIYFG	1S3	1/22	6S7^*2	CASS	LLPFQ	QFFG	2S1	1/25
6S7^*2	CASS	TQTG	QPQHFG	1S5	1/22	6S7^*2	CASS	YKGGGPT	TDTQYFG	2S3	1/25
6S7^*2	CASS	LQWGG	NSPLHFG	1S6	1/22	6S7^*2	CASS	SRFVAGG	TDTQYFG	2S3	1/25
6S7^*2	CASS	LANGGIG	SPLHFG	1S6	1/22	6S7^*2	CASS	FRSVG	TDTQYFG	2S3	1/25
6S7^*2	CASS	RALLREQD	SYNEQFFG	2S1	1/22	6S7^*2	CASS	PFSSR	TDTQYFG	2S3	1/25
6S7^*2	CASS	YQS	YNEQFFG	2S1	1/22	6S7^*2	CASS	SRGFR	TDTQYFG	2S3	1/25
6S7^*2	CASS	LTGRVN	NEQFFG	2S1	1/22	6S7^*2	CASS	PRGSGR	DTQYFG	2S3	1/25
6S7^*2	CASS	SEYVTI	EQFFG	2S1	1/22	6S7^*2	CASS	STVV	DTQYFG	2S3	1/25
6S7^*2	CASS	SGTSS	EQFFG	2S1	1/22	6S7^*2	CASS	SMGR	QETQYFG	2S5	1/25
6S7^*2	CASS	QGGGQA	GELFFG	2S2	1/22	6S7^*2	CASS	LTLGGY	ETQYFG	2S5	1/25
6S7^*2	CASS	PRFI	TDTQYFG	2S3	1/22	6S7^*2	CASS	ARRV	ETQYFG	2S5	1/25
6S7^*2	CASS	SRLVTLGS	FG	2S3	1/22	6S7^*2	CASS	SDH	YEQYFG	2S7	1/25
6S7^*2	CASS	SGLAGV	AKNIQYFG	2S4	1/22	6S7^*2	CASS	GT	YEQYFG	2S7	1/25
6S7^*2	CASS	LAPRD	YEQYFG	2S7	1/22	6S7^*2	CASS	LSLGSS	EQYFG	2S7	1/25
6S7^*2	CASS	FMDT	YEQYFG	2S7	1/22	6S7^*2	CASS	QTV	EQYFG	2S7	1/25
6S7^*2	CASS	AGLALR	EQYFG	2S7	1/22	6S7^*2	CASS	QP	YFG	2S7	1/25
6S7^*2	CASS	FGGSG	QYFG	2S7	1/22
						6S1	CASS	GG	TDTQYFG	2S3	2/9
6S1	CASS	LFKG	SYNEQFFG	2S1	1/7	6S3	CASS	EGQGASD	EQFFG	2S1	1/9
6S1	CASS	YRDTF	SGANVLTFG	2S6	1/7	6S4	CASS	PERL	SGNTIYFG	1S3	1/9
6S3	CASS	LIGG	SYEQYFG	2S7	1/7	6S4	CAST	LRTGN	NEQFFG	2S1	1/9
6S3	CASS	TSRST	EQYFG	2S7	1/7	6S4	CASS	LTSGRAR	DTQYFG	2S3	1/9
6S4	CASS	LESTGAR	NTIYFG	1S3	1/7	6S4	CASS	GARGSGE	QETQYFG	2S5	1/9
6S4	CASS	HKGG	TGELFFG	2S2	1/7	6S4	CASS	LGR	ETQYFG	2S5	1/9
6S4	CASS	LAAGA	DTQYFG	2S3	1/7	6S4	CASS	PQEGG	YEQYFG	2S7	1/9

n, the number of times a given sequence was found. The sequences data are available from EMBL/GenBank/DDBJ under accession numbers AF011574–AF011643.

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